Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2290 ATGGCATTTCATCATCCTAAATTTTTCAAGGTCATACAAAATCACAAAGAGGAGATCAGACTTCCAAAGAAATTCGTCGAGAAATATTGGAAAGGAACTTCAAATCCGGTATCCCTTAAACTCCCAAACGGGGTTGAACACGAAATATTTTGGGTGGAACGTGACGGTGATATTTGGTTTCAAAAGAACTGGGAAAAACTTGCAAATTTTTTAAAATATGGTATTAAAGAAGCTGAAGACATTATTGAAGTGAGTGACAACATTGATAAGAATTTAAATGAGAGTGAACCATCCATGCAACTTCAAATGACAAAAGTTAATGGCAAGAGAAAAACTATGGATTTTGATCCAACACATGAAAAAGTTTCAGGTTCTAACACAGGAAGCATGAATAACATGCTAAAAGAATGTTCAACAACCGAAACTGCTATTGAGAATCCAAGTTTTGAAATTAAAATGACACCATCTTCTATCCAAAACTATAGATTGAGGATACCAACGGAGTTTTCGAGGGAATACTTGAACAAGTTCAAGGGGACGGCGACTATAAGAGTTGGTGAAGACAGAGCTATGAAAGTTAAGATGAAGTTTGATGATATCTATAATAGATCTCTTGTGAGTGCTGGTTGGAACAAAATTATTATAAAGTATAAGTTACAAACTAATGATGTTTGTATATTTGAGATGATTCAACTTCAACCACCTTCCTTTGCTGTAACTATTATTCGAGGAGAAGAACATCCAAGCCCTAAGAAGTTGAAAGGTTACAAAGAAGGAAAATCTTGTGATAGTATTGCAAAGAGAAAAGACCTTGGAGAAACTTCTAGGAGCTGCCCAAAATTACATGTTCTAGAGGATAATTCAGAAGATAATAGTGTGACTGAACATAATTCATTTGAAATTGTTGTGAATTCATCATACCCGTATGTACCAAATGAGTTTATGAATAGACATATTGGATGTCATGGAAAATTCGTAGAGTTGAAAGTGGAAGAAAAATGTTGGTTTGTGAAAGTGAATTATTATCCCAAACAAAGTAAACTGTATGCAGGGTGGAGAAAATTTATGAAAGAATGCAAATTGGAGACAGGGGATATTTGTTTCTTTGAGTTGGTTGATGAGAACAAATATGTGTTTAAGGTTTCATTTGGAAGGAACAACCTAGGAGATGTTGGATCTGTTTGA 1185 0.3443 MAFHHPKFFKVIQNHKEEIRLPKKFVEKYWKGTSNPVSLKLPNGVEHEIFWVERDGDIWFQKNWEKLANFLKYGIKEAEDIIEVSDNIDKNLNESEPSMQLQMTKVNGKRKTMDFDPTHEKVSGSNTGSMNNMLKECSTTETAIENPSFEIKMTPSSIQNYRLRIPTEFSREYLNKFKGTATIRVGEDRAMKVKMKFDDIYNRSLVSAGWNKIIIKYKLQTNDVCIFEMIQLQPPSFAVTIIRGEEHPSPKKLKGYKEGKSCDSIAKRKDLGETSRSCPKLHVLEDNSEDNSVTEHNSFEIVVNSSYPYVPNEFMNRHIGCHGKFVELKVEEKCWFVKVNYYPKQSKLYAGWRKFMKECKLETGDICFFELVDENKYVFKVSFGRNNLGDVGSV* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2290 394 ProSiteProfiles B3 DNA-binding domain profile. 148 245 IPR003340 GO:0003677
Psa6g2290 394 CDD B3_DNA 302 383 IPR003340 GO:0003677
Psa6g2290 394 SUPERFAMILY DNA-binding pseudobarrel domain 144 243 IPR015300 -
Psa6g2290 394 Gene3D - 2 78 IPR015300 -
Psa6g2290 394 SMART B3_2 299 385 IPR003340 GO:0003677
Psa6g2290 394 SMART B3_2 149 245 IPR003340 GO:0003677
Psa6g2290 394 ProSiteProfiles B3 DNA-binding domain profile. 293 387 IPR003340 GO:0003677
Psa6g2290 394 PANTHER B3 DOMAIN-CONTAINING 271 386 - -
Psa6g2290 394 PANTHER B3 DOMAIN-CONTAINING 4 74 - -
Psa6g2290 394 PANTHER B3 DOMAIN-CONTAINING 96 243 - -
Psa6g2290 394 CDD B3_DNA 147 243 IPR003340 GO:0003677
Psa6g2290 394 SUPERFAMILY DNA-binding pseudobarrel domain 5 69 IPR015300 -
Psa6g2290 394 SUPERFAMILY DNA-binding pseudobarrel domain 298 382 IPR015300 -
Psa6g2290 394 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 4 74 - -
Psa6g2290 394 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 271 386 - -
Psa6g2290 394 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 96 243 - -
Psa6g2290 394 Pfam B3 DNA binding domain 151 243 IPR003340 GO:0003677
Psa6g2290 394 Pfam B3 DNA binding domain 308 380 IPR003340 GO:0003677
Psa6g2290 394 Gene3D - 128 247 IPR015300 -
Psa6g2290 394 Gene3D - 283 387 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2290 Psa-Chr6 164468753 164470688 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2290 299 392 B3 DNA Binding Superfamily AT3G18990 32.353 7.57e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa6g2290 B3 4.7e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2290 - - mtr:MTR_1g035620 308.145