Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2286 ATGGGTCGTGGAAAAATAGAGATCAAGAGGATCGAGAACACTACAACAAGACAAGTTACATTTTCAAAAAGAAGAACAGGATTACTCAAGAAAACTAACGAACTTTCTGTGCTTTGTGATGCACAAATCGGTCTCATCATTTTCTCAAGCACTGGGAAACTTTTCCAGTATTGCTCTCAACCCTATAGGATGGATCAGATTATTGAAAAGTACCAGAGATGTTCTGGTAAACGAATAATTGGGGAGCATGATCATCAGATTCACCATAGGGAAGAAATGTTTCATGACATGGCAATGCTGAGGCAAGAAAGTCTTCGTATTGAATTTGGAATTCAAAGATATCTTGGAGGTGACATTAACTGTTTGAAGTATGATGATTTGACTAAACTTGAAGAGGAATTAGAGATTTCTCTTGCTAAAATTCGATATCGTCAGAATGAGCTTGTGCAGCAGCAAATGGAGAATCTGAGAAGGAAGGAAAGAATATTGGAAGATGAGAACATAAATTTATCTAACTGGGATCATAGGGCAATGATGGAAGAAAACAAAAGAGTGCAAGAACATGTAATGGATCAGTTTCCATTTTTTGAGGACCAACCTTCTAGTAGTTTCCTTCAACTTGCTGCACCTGTTCTTAGTCCTTATCTTCAGCTTGCTCAGCCAAATACTCAAGATTATTTCAAGGCTAGGGACTCTGATGAGCCATAA 708 0.3785 MGRGKIEIKRIENTTTRQVTFSKRRTGLLKKTNELSVLCDAQIGLIIFSSTGKLFQYCSQPYRMDQIIEKYQRCSGKRIIGEHDHQIHHREEMFHDMAMLRQESLRIEFGIQRYLGGDINCLKYDDLTKLEEELEISLAKIRYRQNELVQQQMENLRRKERILEDENINLSNWDHRAMMEENKRVQEHVMDQFPFFEDQPSSSFLQLAAPVLSPYLQLAQPNTQDYFKARDSDEP* 236
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2286 235 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Psa6g2286 235 ProSiteProfiles K-box domain profile. 90 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa6g2286 235 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Psa6g2286 235 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 219 IPR031050 GO:0005634|GO:0048316
Psa6g2286 235 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Psa6g2286 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Psa6g2286 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa6g2286 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa6g2286 235 PANTHER MADS BOX PROTEIN 1 219 - -
Psa6g2286 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa6g2286 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa6g2286 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa6g2286 235 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa6g2286 235 Coils Coil 146 169 - -
Psa6g2286 235 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Psa6g2286 Psa-Chr6 164194375 164196187 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2286 1 231 MADS-box Gene Family AT5G23260 45.560 1.84e-62 194
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Psa6g2286 K-box 7e-17 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2286 - - gmx:100783876 290.426