Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2284 ATGGGTGCAACAAATGGTAGCAGATATAAAAGAAGCAAAGTTTCAAGAATGGTTGAAAAAAGTTCGATTACTCGAAAATTGAGTAAACGCGATTTCGATGAGATAAAATGGACAAACATGATTCCGGAATGTCCGATATATCATCCATCAGAACAAGAATTTCAGAATCCTTTAGTTTATCTTCAGAAAATCGCGCCCGAGGCTTCTAAATATGGTATATGCAAAATTGTTTCACCAGTTACTGCTTCTAATTCTGCTGATTTTGTCATAACGAAAGAGAAAAAGGACTTTAAGTTTGAAACAATTGTACAGCCTCTTCGTCTTTCGAAATGGAATGAGAAGGATATGATAACGTTTTCTAAGAGAGGAAGAAAATATACGTATCGTGAATTCGAGGCGCTGGCAAACAAGGCCTTTTCCAGTAGATTTGGCAGTTTCAAAGATATTTCTTCTTCGAGTGTCGAAAAAGCGTTTTGGCACGAAATGATGCATGGAGAGAAAAGAACTGTTGAGTATGGAGTTAACATTGAGGGTAGTGTCTTTTCATGTGATCCTGATGATAGGCTTGGAACAAGCAAATTCAATTTGAAGAAACTGGCGCGGCTACCGCAGTCTCCGTTGCGTTTAGTTGACAAAGGAATTCCAGGAGTAACTGATCCAATGCTTTACATTGGGATGCTGTTCAGTATGTTTGCATGGCATGTAGAAGATCACTATTTGTACAGTATAAATTATCATCACTCTGGTGGAAACAAAACTTGGTATGGTGTTCCTAGTTATGCAGCCTCTGAATTTGAAAAGACTGTCTTGAATCATGTGTATTGCAACAAAGTGTTGACAGAACATGGAGAGAATGGTGCATTCCAATTTATATCGCATAAAACTACGATGTTTCCTCCGAATGTCTTGTTGAAAAACGATGTTCCGGTTTATAAGGCTCTGCAGAAGCCGGGAGAGTTTGTCGTCACCTTTCCTAAATCATATCATGCTGGATTTAGTCATGGCTTTAATTGTGGAGAAGCTGTAAACTTTGCTATTGGTGATTGGTTTCCACTTGGTGCTGCGGCTAGCAAACGTTACGCACATCTCAAGATGCTACCGATAATTCCATACGAAGAACTTCTTTGTAAAGAGGCAGTGCTTATCTACAAGTCCTCAAAAGTCAGAAGTTCCAAGAAAAAACTTGAAGTGACACCGTCTTATCGTGCTATTGTACCGTCTTTCTTGCATCTTATGCAATTTTACAAGACTTCGTTATCGCGGTTGAACAGTTCAAGAAACGTGTCGAGCTCTTCTGATACATTATTAACCTCTCTGACATGCAGCATCTGCCATAGGGATTGTTATGTAGCTTACTTGTTGTGCAAGAAATGCTATTCTTACCCAATTTGCCTTTTCCATGATGTTGTGCCACAAACTTGCTTATGTGGGAGAAAATATTCTGTTTTTAAGAGGAATCACATGTTGGAATTGGAACATGCTGCCAAAAGTTTTCAACGCGAAAAAGAATGCATCGACGCATCATCTTTAACAAGTATATTCTCCAATAATGACATAAACGAATCCACCAAAGATCTCAAGGTATGTGAAAATGTAAACTTTAAATTGATTTACAATTTAGAATCCTCAAAACTTCATTGA 1641 0.3821 MGATNGSRYKRSKVSRMVEKSSITRKLSKRDFDEIKWTNMIPECPIYHPSEQEFQNPLVYLQKIAPEASKYGICKIVSPVTASNSADFVITKEKKDFKFETIVQPLRLSKWNEKDMITFSKRGRKYTYREFEALANKAFSSRFGSFKDISSSSVEKAFWHEMMHGEKRTVEYGVNIEGSVFSCDPDDRLGTSKFNLKKLARLPQSPLRLVDKGIPGVTDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGGNKTWYGVPSYAASEFEKTVLNHVYCNKVLTEHGENGAFQFISHKTTMFPPNVLLKNDVPVYKALQKPGEFVVTFPKSYHAGFSHGFNCGEAVNFAIGDWFPLGAAASKRYAHLKMLPIIPYEELLCKEAVLIYKSSKVRSSKKKLEVTPSYRAIVPSFLHLMQFYKTSLSRLNSSRNVSSSSDTLLTSLTCSICHRDCYVAYLLCKKCYSYPICLFHDVVPQTCLCGRKYSVFKRNHMLELEHAAKSFQREKECIDASSLTSIFSNNDINESTKDLKVCENVNFKLIYNLESSKLH* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2284 546 ProSiteProfiles JmjC domain profile. 191 361 IPR003347 -
Psa6g2284 546 PANTHER LYSINE-SPECIFIC DEMETHYLASE 21 532 - -
Psa6g2284 546 SMART cupin_9 191 361 IPR003347 -
Psa6g2284 546 ProSiteProfiles JmjN domain profile. 44 85 IPR003349 -
Psa6g2284 546 SMART JmjN_1 43 84 IPR003349 -
Psa6g2284 546 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 21 532 - -
Psa6g2284 546 Pfam JmjC domain, hydroxylase 221 344 IPR003347 -
Psa6g2284 546 Gene3D Cupin 44 405 - -
Psa6g2284 546 Pfam jmjN domain 45 77 IPR003349 -
Psa6g2284 546 SUPERFAMILY Clavaminate synthase-like 195 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2284 Psa-Chr6 164083946 164086563 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2284 41 507 JUMONJI Transcription Factor Family AT2G34880 29.520 3.49e-56 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Psa6g2284 JmjC 2.1e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2284 - - gmx:100809650 751.895