Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2279 ATGGCTGCTCAACTCACTTATTTTGTTGGATCTCATGTTTGGGTTGAGGACACTGATCAAGCTTGGTTAGATGGAGAAATTCTTGAATCTAAAGATAACGAGATCACCGTTAGCTTTGAATCAGGAACAAAGGTTGTGAGCAAATCAGCTAATATATACCCGAAAGATCCTGAGTTTCCACCTAACGGAGTGGAAGATATGACACGACTTGCATATCTGCATGAACCGGGAGTACTTCAGAATTTGCAAATTCGTTATACCCTCAATGATATATATACATACACAGGAAACATCTTGATAGCAGTGAACCCTTTTCAAAGGTTACCTCATTTGTATGCGGCTGATACAATGGCAAAGTATAAAGGCGTGTCTTTTGGTGAGCAGAGTCCACATCCTTTTGCAATTGCAGGTTATGCATATAGGAAGATGATAAACGAAGAAAAAAGCCAGGCAATTTTGGTTAGTGGAGAAAGTGGAGCCGGTAAAACAGAAAGCACAAAGATGCTTATGCATTATCTTGCTTATTTGGGAGGGAGAGCAGCAACTGAGGGACGGTCTGTCGAGCAACAAGTTCTCGAGTCCAATCCTGTTTTAGAAGCATTTGGGAATGCAAAGACAGTTAGGAATAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAGTTTGATCGAAAGGGGAGAATTTCAGGAGCTGCTATCAGAACGTATTTGCTAGAGCGATCACGCGTTTGTCAAGTTTCTGATCCCGAGAGAAATTATCATTGCTTTTATATGCTTTGTGCTGCGCCAAAAGAGGATGTTGAACGGTTCAAATTGGGAAATCCGAGATCCTTTCATTATCTTAATCAATCAAATTGCTATGAACTGGATGCGTTGGATGATTCAAAGGAGTACCTTGCAACAAGGAGAGCCATGGAAGTTGTTGGAATCAGCGCTGATGAAACAGATGCGATCTTTCGAACAGTAGCTGCTGTACTTCATTTAGGAAACATTGAATTTGTTAAAGCAGTGGATGAAGGAATGGATTCCTCTAAACCTAAAGATGACAAATCTTATTTCCACCTAAAAACCGCAGCTGAACTTTTGATGTGCGATGAAAAGTCCCTTGAAGACTCTTTTTGCAAACGCCTTATAGTGACTCGTGGTGAGGCTATAACAAAATGCCTTGATCCAAATTCTGCAGCTCTCAGTCGAGATGCATTGGCTAAAATTGTTTATTCAAGGCTTTTTGACTGGATTGTGGACAAGATTAACAACTCTATTGGACAAGATCCAACTTCGAAGAACTTAATTGGAGTTCTAGATATATACGGATTCGAGAGTTTCAAGACAAACAGCTTCGAGCAATTTTGTATCAATTTGACAAATGAGAAGTTACAGCAGCATTTCAACCAGCATGTCTTCAAAATGGAGCAAGAGGAATATACAAAGGAAGAAATTGATTGGAGTTATATAGAGTTCGTTGATAATCAAGATGTTCTCGATCTTATTGAGAAGAAACCTGGCGGCGTTATTGCTCTTCTGGACGAGGCCTGTATGTTTCCAAGATCAACGCACGAAACATTTGCTGAAAAGCTATATCAAACACTTAAGGACAATAAGCGATTCAGCAAACCGAAGTTGTCACGAATCCTGACTTACCTTCAATTCCTTTGCTGGTGTGACTTTTCCCACCTTTACACGAGGAAAGTACTAATATCAATAAAGTTTTCTTCTATAGCCACTCAGTTTAAGATAGGAAAGACAAAAGTTTTCCTGAGAGCAGGTCAAATGGAAGAACTAGATGCATGCCGTGCCGAGGGTGTAATGGAGGCAATTAGGATAAGTTGCGCTGGATATCCAACTCGAAAGAACTTTGATGAATTTGTTCATCGGTTTCGTATAATGGAACCTAAGGTTCTAAAATCATGTCCTGATGAGATGACGGCTTGCAAGAGACTTCTAGATAAAGCAAACCTTAAAGATTATCAGATAGGAAAGACAAAAGTTTTCCTGAGAGCAGGTCAAATGGCAGAACTAGATGCATGTCGTGCCGAGGTCCTAGGAAGATCCGCAATCGTTATTCAGAAAAAAGCTCGCACTCTTAGACTTTTCCCACCTTTACACGAGGAAAGTACTAAATCAACAAAGTTTTCTTCTATAGCCACTCAGTTTAAGCAACAACTGCAATCTTTGCTTGAAACATTGAGTGCGACTGAGCCACACTACATTCATTGTGTAAAGCCAAATAATCTTCTTAAGCCGGGGATATTTGAGAACAACGATGTGTTACAACAGCTTCGATGTGGGGGTGTAATGGAGGCAATTAGGATAAGTTGCGCTGGATATCCAACTCGAAAGAACTTTGATGAATTTGTTCAGCGGTTTAGTATATTGGAACCTAAGGTTCTAAAATCATGTCCTGATGAGATGACGGCTTGCAAGAGACTTATAGATAAAGCAAACCTTAAAGGTTATCAGGTAGTAGTTCTTATCTTAATCTCAGTTATAGTATTTTTATTTGCTCGCAGGGAAAGGGACATAAAGTTTTCATCTGAGAGCAGCGCTTCAAATGGCAGAACTGATGCATGTCGTGCGCGCGGGGTCCTAGGAAGTCCGCAATCGTTATTTGATTCAGAAAAAGCTCGCACATATATTTGTGTGAAAACGACAACTTGCAAGACAGTCGGTTTGATGAGAAGGGAGGCCGCATCTTTGATAATCCAGAAACAAATCCGCATGTATCTTTCGAGAAGTGCTTATAAAACTACCTATTCCAAAGCTGTTTGTATTCAAACCGGCATGCGGGGAATGGCTGCTAGAAATGAACTTCGATTCAGGAAGCGGACACACGCTGCAACTGTTATTCAGGGTTACTACAGATGTTATTTAGCTCATACTTATTTCCAAAGGCTAAAGAAAGCAACAATCGCAATGCAGTGCTCCTGGAGGAGAACACGAGCACGAAGAGAACTTCGAAAGCTTAAAATGGCTGCTAAGGAATCCAAGGCCCTAGAAGCCGCGAAAATTCATCTAGAAAAGCAAGTTGAGGAACTATCTGAGTGTCTAGAGACAGAGAAGAGAATGAGGGAAGCCAAGACACAGGAAAATGAAAAATTACAATGTGCTTTGGAAGAGATGGAGCTTCAGTTCAAAGAAACTAAATCGGAGCTCATTCAGGAACGCGAGGCTGCAAAGAAATTAGCTGAACAAGTTCCAACTTTACTGGAAAATAATGTTGCTAATAATGAATTGATCAATAAACTTACTGCAGAAAATGAACAACTCAAGGATCAGGTTAGTTCATTGGAAAGAAAAATTGACGAGACAGAAAAGAAATATGAAGAAACTAGCACGATTAGTGAGGAGCGGATGAATCAAATTATAGAAACAGAATCAAAGATGATTGAGCTAAAGACAAACATGCAAAGGCTTGAAGAAAAACTTTCTGATATGGAAACCGAGAATCAAATTTTCCGAAAGCAAACGCTATTGACCTCATCATCCAAGAGAATAACACCTGCTGCAATTCCGCCCTTGGAAAATGGTCATCCGGTTGCAGTAAAAACACTTGGTTCAGAATCTGTGAGGAGATCTCATATGGAGAGGCATCAAGAGAGTGTAGATGCTCTTTTCAAGTGTGTGGTAAAAGATATCGGGTTCTCTGATGGGAAACCTGTTGCGGCATTTACCCTTTATAACTGTTTGCTACATTGGAAATCTTTTGAAGCAGATAAGACAAGTATCTTTGATCGTCTTATTCAGCTGATCGGTTCTGCAATAGAGGATCAGGATAATGACAATTGTATGGCTTATTGGCTGTCCAATACATCTGCTTTGTTTTTTCACCTTCAACGATGTTTAAGAGCACCGGCACGAAAACCACCCACTCCAACAGGGTTTTTTGGAAGAGTGACTCAGGGTTTCCGCTCATCGAATAGTCTTTCGAGTGGTTCGTTTGATGTAGAACATCAAGTTGAAGCAAAGTATCCAGCTTTGCTTTTCAAGCAACAGCTTGCAGCTTACGTGGAAAAGATATATGGAATCGTTCGAGAAAATATGAAGAAAGAATTGTCCCCTCTACTTTCTACTTGCATAGAGGAGCAGAGAACACGAAACGACGACAGCCAACCATCTGGTTCATGGCTCAAAATTATTGAATGCCTTGATAGATTTCTCAAGATTCTAAAAGAAAATTATGTGCCTCCTATTCTAATTCAAAAGGTATTTAATCAGACGTTTCAATATATTAACGCAGAAATATTTAACAGCCTTCTATTGCATAAAGAATGCTGCACATTCAACTCTGGAGAATATATAAAATCAGGGTTAGCTGAACTAGAATTATGGTGTACTGAAGTAACCGAAGAGTATGCTGGCTCGTCTTTGGATGAACTCAACCATTCAAAACAAGCAGTTAGATTCTTGGTTTCTCAAGAGAAGGACGAAATATCCTACGATGATCTTACAAATGACATCTGCCCGGTCTTGAGTTCTCAACAGCTTTATAGATTATGTACACTATACTCGAACGAAAATGAAAATGAGAACTCCAAAAGTGTATCAACAGATGTAACTACTAGAATAAAACTGCTAATGACAGACGATGTAGGCGAAGATGACAAATCCTTCTTGTTGGAAGACAATTCAAGTCTTCCTATCATTGTTGAAGAGGTTTCGCATTCTCAAAAAGATAAGACAATTCCGAAAGTAAAACCGCCTTCGGAACTACTCGAGAGTGCATCCTTCCAATTCTTACATGATTATAGTTAA 4755 0.3971 MAAQLTYFVGSHVWVEDTDQAWLDGEILESKDNEITVSFESGTKVVSKSANIYPKDPEFPPNGVEDMTRLAYLHEPGVLQNLQIRYTLNDIYTYTGNILIAVNPFQRLPHLYAADTMAKYKGVSFGEQSPHPFAIAGYAYRKMINEEKSQAILVSGESGAGKTESTKMLMHYLAYLGGRAATEGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDRKGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPKEDVERFKLGNPRSFHYLNQSNCYELDALDDSKEYLATRRAMEVVGISADETDAIFRTVAAVLHLGNIEFVKAVDEGMDSSKPKDDKSYFHLKTAAELLMCDEKSLEDSFCKRLIVTRGEAITKCLDPNSAALSRDALAKIVYSRLFDWIVDKINNSIGQDPTSKNLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGVIALLDEACMFPRSTHETFAEKLYQTLKDNKRFSKPKLSRILTYLQFLCWCDFSHLYTRKVLISIKFSSIATQFKIGKTKVFLRAGQMEELDACRAEGVMEAIRISCAGYPTRKNFDEFVHRFRIMEPKVLKSCPDEMTACKRLLDKANLKDYQIGKTKVFLRAGQMAELDACRAEVLGRSAIVIQKKARTLRLFPPLHEESTKSTKFSSIATQFKQQLQSLLETLSATEPHYIHCVKPNNLLKPGIFENNDVLQQLRCGGVMEAIRISCAGYPTRKNFDEFVQRFSILEPKVLKSCPDEMTACKRLIDKANLKGYQVVVLILISVIVFLFARRERDIKFSSESSASNGRTDACRARGVLGSPQSLFDSEKARTYICVKTTTCKTVGLMRREAASLIIQKQIRMYLSRSAYKTTYSKAVCIQTGMRGMAARNELRFRKRTHAATVIQGYYRCYLAHTYFQRLKKATIAMQCSWRRTRARRELRKLKMAAKESKALEAAKIHLEKQVEELSECLETEKRMREAKTQENEKLQCALEEMELQFKETKSELIQEREAAKKLAEQVPTLLENNVANNELINKLTAENEQLKDQVSSLERKIDETEKKYEETSTISEERMNQIIETESKMIELKTNMQRLEEKLSDMETENQIFRKQTLLTSSSKRITPAAIPPLENGHPVAVKTLGSESVRRSHMERHQESVDALFKCVVKDIGFSDGKPVAAFTLYNCLLHWKSFEADKTSIFDRLIQLIGSAIEDQDNDNCMAYWLSNTSALFFHLQRCLRAPARKPPTPTGFFGRVTQGFRSSNSLSSGSFDVEHQVEAKYPALLFKQQLAAYVEKIYGIVRENMKKELSPLLSTCIEEQRTRNDDSQPSGSWLKIIECLDRFLKILKENYVPPILIQKVFNQTFQYINAEIFNSLLLHKECCTFNSGEYIKSGLAELELWCTEVTEEYAGSSLDELNHSKQAVRFLVSQEKDEISYDDLTNDICPVLSSQQLYRLCTLYSNENENENSKSVSTDVTTRIKLLMTDDVGEDDKSFLLEDNSSLPIIVEEVSHSQKDKTIPKVKPPSELLESASFQFLHDYS* 1585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2279 1584 Gene3D Myosin VI head, motor domain, U50 subdomain 312 424 - -
Psa6g2279 1584 Gene3D Myosin VI head, motor domain, U50 subdomain 699 711 - -
Psa6g2279 1584 Gene3D - 252 310 - -
Psa6g2279 1584 SMART iq_5 917 939 IPR000048 GO:0005515
Psa6g2279 1584 SMART iq_5 894 916 IPR000048 GO:0005515
Psa6g2279 1584 SMART iq_5 942 964 IPR000048 GO:0005515
Psa6g2279 1584 SMART iq_5 965 987 IPR000048 GO:0005515
Psa6g2279 1584 Coils Coil 979 1009 - -
Psa6g2279 1584 Gene3D - 614 677 - -
Psa6g2279 1584 Gene3D Kinesin motor domain 65 440 IPR036961 -
Psa6g2279 1584 Gene3D Kinesin motor domain 734 772 IPR036961 -
Psa6g2279 1584 PANTHER MYOSIN 1075 1581 - -
Psa6g2279 1584 PANTHER MYOSIN 577 601 - -
Psa6g2279 1584 PANTHER MYOSIN 698 1041 - -
Psa6g2279 1584 PANTHER MYOSIN 601 695 - -
Psa6g2279 1584 PANTHER MYOSIN 5 545 - -
Psa6g2279 1584 CDD MYSc_Myo11 76 822 IPR036018 -
Psa6g2279 1584 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Psa6g2279 1584 Pfam IQ calmodulin-binding motif 944 964 IPR000048 GO:0005515
Psa6g2279 1584 Pfam IQ calmodulin-binding motif 897 916 IPR000048 GO:0005515
Psa6g2279 1584 ProSiteProfiles IQ motif profile. 943 972 IPR000048 GO:0005515
Psa6g2279 1584 PANTHER MYOSIN HEAVY CHAIN 577 601 - -
Psa6g2279 1584 PANTHER MYOSIN HEAVY CHAIN 601 695 - -
Psa6g2279 1584 PANTHER MYOSIN HEAVY CHAIN 5 545 - -
Psa6g2279 1584 PANTHER MYOSIN HEAVY CHAIN 1075 1581 - -
Psa6g2279 1584 PANTHER MYOSIN HEAVY CHAIN 698 1041 - -
Psa6g2279 1584 Gene3D - 712 733 - -
Psa6g2279 1584 Gene3D - 441 544 - -
Psa6g2279 1584 Coils Coil 1017 1065 - -
Psa6g2279 1584 ProSiteProfiles Myosin motor domain profile. 62 849 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa6g2279 1584 CDD MyosinXI_CBD 1196 1551 IPR037975 GO:0007015
Psa6g2279 1584 Coils Coil 1073 1114 - -
Psa6g2279 1584 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 697 IPR027417 -
Psa6g2279 1584 ProSiteProfiles Dilute domain profile. 1245 1529 IPR002710 -
Psa6g2279 1584 ProSiteProfiles IQ motif profile. 920 947 IPR000048 GO:0005515
Psa6g2279 1584 Pfam Myosin N-terminal SH3-like domain 10 50 IPR004009 GO:0003774|GO:0005524|GO:0016459
Psa6g2279 1584 SMART DIL_2 1402 1509 IPR002710 -
Psa6g2279 1584 Pfam DIL domain 1403 1506 IPR002710 -
Psa6g2279 1584 Pfam Myosin head (motor domain) 596 667 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa6g2279 1584 Pfam Myosin head (motor domain) 704 818 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa6g2279 1584 Pfam Myosin head (motor domain) 64 543 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa6g2279 1584 SMART MYSc_2a 56 840 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa6g2279 1584 Gene3D - 894 944 - -
Psa6g2279 1584 Gene3D - 945 993 - -
Psa6g2279 1584 Gene3D - 994 1170 - -
Psa6g2279 1584 ProSiteProfiles IQ motif profile. 966 995 IPR000048 GO:0005515
Psa6g2279 1584 Gene3D - 776 824 - -
Psa6g2279 1584 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 704 994 IPR027417 -
Psa6g2279 1584 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa6g2279 1584 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa6g2279 1584 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa6g2279 1584 PRINTS Myosin heavy chain signature 431 459 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa6g2279 1584 PRINTS Myosin heavy chain signature 484 512 IPR001609 GO:0003774|GO:0005524|GO:0016459
Psa6g2279 1584 Coils Coil 1122 1156 - -
Psa6g2279 1584 ProSiteProfiles IQ motif profile. 895 921 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2279 Psa-Chr6 163849527 163863732 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2279 1 695 Myosins gene family AT1G04600 68.435 0.0 1051
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2279 K10357 - gmx:100788123 1066.99