Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2265 ATGGTCAACGAATCTGAACCCAAAGTTTGTGATAATGCAATTCCACCACCAAAATCTGAAATCAAGAGGGAGTATGAGGATGAAGATCAGAATGAAGTGATTGCAAAGAAGCAGAAAAGAGACGAGGTTGTTATAAAACAAGAGGTTAAGGAGGAAACTAATTCAGATGATGCTGAACATGACAAGAAACTTGAAGCTAAAACTGAATCTGATACTGGTTGCGGATCTTTGAAATCTTCTGATGATGGTATCTCAGATCCTGATTCTCACGGAAGCCCTGACGAGGATAATCCCGAAGATTTGCAGAATCCTGAGTACAACGAGGAAGAAATAGAGGGACAAGTCTCCATAACACCTCAGGAAAGGCACGAAACTCCAGCCAGACTAAACGAAAAGCATGCTGCACCGAAGACAATAATTGTTAAAAACTTGTCATATAGTGTGGAGCGGGCGGATATGGATGATATTTTCAAAGATTGTGGTGAAGTTGTTGATGTTCGATTCAAGACAGATTGCGAAGGGAGGTTTAAAGGCTATGGATATGTCGAGTTTGGAACAGCAGAAGCAGCAGAAAAAGCTCTGAAATTGAATAATACAGAACTATTGAATCGCCGCATCAAAGTTGACATAGCTCTAGAAAAGAGTGAATATCCCCCATATAGAAGCTCACATACGGGTGGAGATCTTCAGTCTCACACTGTAAAGGGTTTTGACGCATCTCTTGTAGAAAACAAGCCTCAAAACTCAGCTACACCAAATGAAACAATCGGTGCATCAAAGACCATATATGTCAGAAACTTGTCATACACCGTGGAACGAGCTGATATGGAAAACCTTTTCAAAGATTGTGGAGAAATTGTTGATGTTCGTCTCCATACAGACCGCGAAGGAAATTTTAAAGGCCATGGGCATATTCAGTTTGCAACAGCGGAAGCAGCACAAAAGGCTCTCGCGTTCAACAGGAAAGTAGTTTTTAACCGTCTCATGTTTGTTGGTTTAGCTTCGGAAAGGGGTAAATATGCCCCCAATGGAAGCAGCTGGGCCTGGAGCAGCTCATTGCATAAGGATGAAAGATTACAGTCTCAAACTGTACCTGTGAAGTGTATTGATACATCTCTTCCGGAGGGCAAGTTGAGTTGTGCTAAGGAGGTTAAGGATGTAGAGATGTTTGATGCTGCCCCTGCTGAGAATAAACCTGAAACCCCAGCTATACAAAAAGAGAAAAATGCTGCATCCAAAACAGTATGTGTTAGAAACTTGTCATTCGATGTGGAACGGGCTGAAATTGAAAATATTTTCAAAGATTGTGGAGAAGTTGTTGATGTCCGTCTCCATGTGGATGTGGAGTTTGCAAATACAGAAGCAGCAGAAAAGGCAAGCCCTTGA 1386 0.4177 MVNESEPKVCDNAIPPPKSEIKREYEDEDQNEVIAKKQKRDEVVIKQEVKEETNSDDAEHDKKLEAKTESDTGCGSLKSSDDGISDPDSHGSPDEDNPEDLQNPEYNEEEIEGQVSITPQERHETPARLNEKHAAPKTIIVKNLSYSVERADMDDIFKDCGEVVDVRFKTDCEGRFKGYGYVEFGTAEAAEKALKLNNTELLNRRIKVDIALEKSEYPPYRSSHTGGDLQSHTVKGFDASLVENKPQNSATPNETIGASKTIYVRNLSYTVERADMENLFKDCGEIVDVRLHTDREGNFKGHGHIQFATAEAAQKALAFNRKVVFNRLMFVGLASERGKYAPNGSSWAWSSSLHKDERLQSQTVPVKCIDTSLPEGKLSCAKEVKDVEMFDAAPAENKPETPAIQKEKNAASKTVCVRNLSFDVERAEIENIFKDCGEVVDVRLHVDVEFANTEAAEKASP* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2265 461 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 213 IPR000504 GO:0003723
Psa6g2265 461 SUPERFAMILY RNA-binding domain, RBD 259 459 IPR035979 GO:0003676
Psa6g2265 461 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 69 348 - -
Psa6g2265 461 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 382 459 - -
Psa6g2265 461 Gene3D - 226 342 IPR012677 -
Psa6g2265 461 Gene3D - 390 460 IPR012677 -
Psa6g2265 461 Gene3D - 98 225 IPR012677 -
Psa6g2265 461 SMART rrm1_1 138 209 IPR000504 GO:0003723
Psa6g2265 461 SMART rrm1_1 261 332 IPR000504 GO:0003723
Psa6g2265 461 MobiDBLite consensus disorder prediction 1 132 - -
Psa6g2265 461 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 413 461 IPR000504 GO:0003723
Psa6g2265 461 SUPERFAMILY RNA-binding domain, RBD 130 227 IPR035979 GO:0003676
Psa6g2265 461 MobiDBLite consensus disorder prediction 83 97 - -
Psa6g2265 461 MobiDBLite consensus disorder prediction 17 69 - -
Psa6g2265 461 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 260 336 IPR000504 GO:0003723
Psa6g2265 461 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 69 348 - -
Psa6g2265 461 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 382 459 - -
Psa6g2265 461 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 207 IPR000504 GO:0003723
Psa6g2265 461 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 415 459 IPR000504 GO:0003723
Psa6g2265 461 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 327 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2265 Psa-Chr6 162811790 162822349 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2265 126 378 Eukaryotic Initiation Factors Gene Family AT4G34110 25.556 1.22e-14 74.3