Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2264 ATGTCTGGAGTTCCGTTTCCGTCGAACCTTTTACCGTCCGACGGGAGTCCCGAATGGCTAAACAAATCCGACAACGCCTGGCAACTGATGGCCGCGACGTTAGTCGGGCTACAAAGTGTTCCGGGGCTAATAATTTTATACGGCGGCGCAGTGAAAAAGAAATGGGCAGTGAATTCAGCATTCATGTCACTCTATGCATTTGCATGTGTGTTTTTCTGTTGGGTTATTTGGGGTTATAGAATGTCATTTGGTGATAGGCTTTTACCATTTTGGGGTAAACCAGGAGTTGCACTTGATGAAAAGTATCTTTTCAAACAAGCTTTTTTGGGAGCTTTTCCTGTTGCTACTATGGTTTACTTTCAGTGTGTTTTTGCTGCTATTACTTTGATTTTAATAGCTGGTGCTTTGCTTGGAAGAATGAACTTCTATGCTTGGATGTTGTTTGTTCCTTTATGGCTCACTTTTTCATATACTATTACTGCTTTTAGTATTTGGAGCCCTAATGGATTTCTTTCCAAAATGGGGATTATTGATTACTCTGGTGGTTATGTTATTCATTTGTCTTCCGGCGTCGCTGGTTTCACCGCCGCTTATTGGGTTGGACCGCGACTAAACAAAGATAGGGAAAGGTTTCCACCAAACAATCTACTTCTTATGTTAGCAGGAGCTGGACTGTTATGGTTGGGATGGACAGGCTTCAATGGAGGAGATCCTTACTCAGTTGGATTAGATGCTTCCTTGGCTGTCTTGAACACACATGCTTGCACTGCTACTAGCTTGCTTACTTGGGTTTTCCTTGATGTCATTTTCTTCAGAAAGCCTTCTGTTATTGGTGCTGTTCAAGGCATGATTACTGGTTTGGTTTGCATCACTCCAGCTGCGGGTGTTGTACAAGGTTGGGCTGCACTTATAATGGGACTATTCTCCGGCTCGATTCCATGGTTTACCATGATGGTAATCCACAAGAGATCAAAGCTACTTCAAAAGGTCGACGACACAATGGCAGTGTTACACACTCATGCAATTGCAGGAAGTCTTGGAGGAATTCTCACTGGTCTATTTGCTGAACCAAAACTGAACTACTTGTTCTACAATGCTTATAACAAATACGTTGGTTTATTCTATGGAATACAAATGAACATAGCAAGCACTGGATTCAGACAAATAGGAATCCAATTCCTTGGAATTTTGTTTGTTATCTTTGTTAATGTTGTTAGCACGAGTTTGATATGTCTCGTCATTCGAATCTTCGTTCCGTTGAGAATGTCCGAAGAGGATATGGAGATTGGTGATGAGGCTGCTCATGGTGAAGAAGCTTATGCGATTTGGGGTCAAGGAGATAAGCTTGAGAATTCGAGTTCGAAATATGGAAGTTCTTTGTATGAAGATGTTGAAGTTGCTGCGACGAAGAAGAATAAGCGCGGTAGCGGTAGCCAGATTGAGATGATGTGA 1452 0.4215 MSGVPFPSNLLPSDGSPEWLNKSDNAWQLMAATLVGLQSVPGLIILYGGAVKKKWAVNSAFMSLYAFACVFFCWVIWGYRMSFGDRLLPFWGKPGVALDEKYLFKQAFLGAFPVATMVYFQCVFAAITLILIAGALLGRMNFYAWMLFVPLWLTFSYTITAFSIWSPNGFLSKMGIIDYSGGYVIHLSSGVAGFTAAYWVGPRLNKDRERFPPNNLLLMLAGAGLLWLGWTGFNGGDPYSVGLDASLAVLNTHACTATSLLTWVFLDVIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAALIMGLFSGSIPWFTMMVIHKRSKLLQKVDDTMAVLHTHAIAGSLGGILTGLFAEPKLNYLFYNAYNKYVGLFYGIQMNIASTGFRQIGIQFLGILFVIFVNVVSTSLICLVIRIFVPLRMSEEDMEIGDEAAHGEEAYAIWGQGDKLENSSSKYGSSLYEDVEVAATKKNKRGSGSQIEMM* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2264 483 SUPERFAMILY Ammonium transporter 19 422 - -
Psa6g2264 483 TIGRFAM amt: ammonium transporter 24 440 IPR001905 GO:0008519|GO:0016020|GO:0072488
Psa6g2264 483 ProSitePatterns Ammonium transporters signature. 178 203 IPR018047 GO:0008519|GO:0016020|GO:0072488
Psa6g2264 483 PANTHER AMMONIUM TRANSPORTER 4 483 - -
Psa6g2264 483 Gene3D Ammonium transporter AmtB like domains 12 444 IPR029020 -
Psa6g2264 483 Pfam Ammonium Transporter Family 26 440 IPR024041 GO:0008519|GO:0016020|GO:0072488
Psa6g2264 483 PANTHER AMMONIUM TRANSPORTER MEP2 4 483 IPR001905 GO:0008519|GO:0016020|GO:0072488
Psa6g2264 483 PRINTS Rhesus blood group protein signature 121 137 IPR002229 GO:0005887
Psa6g2264 483 PRINTS Rhesus blood group protein signature 217 235 IPR002229 GO:0005887
Psa6g2264 483 PRINTS Rhesus blood group protein signature 248 270 IPR002229 GO:0005887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2264 Psa-Chr6 162628249 162630403 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2264 114 467 Inorganic Solute Cotransporters AT2G38290 61.864 5.13e-144 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2264 K03320 - gmx:100787856 828.165