Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2254 ATGAATGAGAACCCAAGTTTTGAAGTTAAATTGACACCATCTTCTATCAAAAACTATAGATTGAGGATACCAACTGAGTTTTCTCGAGAATACTTGAACAAGTTCAGAGGGACGGCAACCATAAGAGTCGGTGAAGACAGAACAATGAAAGTTAAGGTGAAGTTCGATGATATCTATAGTCGATCTGTTGTGAGCGCAGGTTGGAAATCGATTATTCAAAAATATAAGTTACAAGTTAATGATGTTTGTATATTTGAGATGATTCAACTTCAACCACCTTCGTTCACTATTGCTATTATTCGAGGAGAAGAAGAAGACCCAAGCCCTAAGAAGTTGAAAGGTTACAAAGAAGGAAAATCTTGTGATAATATTGCAAAGAGAAAGAACATTGGAGAAACTTCTAGGAGCTGCCCAAAACTACATTTAGAAGATCACAGTGTGACTAGACATAATACATTTGAAATTGTTGTGAAATCGTCGTACCCGTATGTACCAAATGAGTTTATGAATAGACATATTGGATGTCATGGAAAATTCTTGGAGTTGAAAGTGGAAGAAAAATCTTGGTTTGTGAAAGTGAGTTATTATCCCACACACAGTACATTGTATGCAGGTTGGAGAAAATTTATGAAAGAATGCAAATTGGAGACAGGAGATACTTGTTTCTTTGAGTTGGTTGATGAGAACAAATATGTGTTTAAGGTTTCATTTGAAAGGAACAACCTAGGAGATGTTAAATCTGTTTGA 747 0.3521 MNENPSFEVKLTPSSIKNYRLRIPTEFSREYLNKFRGTATIRVGEDRTMKVKVKFDDIYSRSVVSAGWKSIIQKYKLQVNDVCIFEMIQLQPPSFTIAIIRGEEEDPSPKKLKGYKEGKSCDNIAKRKNIGETSRSCPKLHLEDHSVTRHNTFEIVVKSSYPYVPNEFMNRHIGCHGKFLELKVEEKSWFVKVSYYPTHSTLYAGWRKFMKECKLETGDTCFFELVDENKYVFKVSFERNNLGDVKSV* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2254 248 SUPERFAMILY DNA-binding pseudobarrel domain 3 106 IPR015300 -
Psa6g2254 248 Pfam B3 DNA binding domain 158 235 IPR003340 GO:0003677
Psa6g2254 248 Pfam B3 DNA binding domain 9 101 IPR003340 GO:0003677
Psa6g2254 248 PANTHER B3 DOMAIN-CONTAINING 126 240 - -
Psa6g2254 248 PANTHER B3 DOMAIN-CONTAINING 2 101 - -
Psa6g2254 248 Gene3D - 1 104 IPR015300 -
Psa6g2254 248 Gene3D - 131 241 IPR015300 -
Psa6g2254 248 ProSiteProfiles B3 DNA-binding domain profile. 147 241 IPR003340 GO:0003677
Psa6g2254 248 CDD B3_DNA 156 239 IPR003340 GO:0003677
Psa6g2254 248 ProSiteProfiles B3 DNA-binding domain profile. 6 103 IPR003340 GO:0003677
Psa6g2254 248 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 126 240 - -
Psa6g2254 248 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 2 101 - -
Psa6g2254 248 CDD B3_DNA 5 101 IPR003340 GO:0003677
Psa6g2254 248 SUPERFAMILY DNA-binding pseudobarrel domain 156 237 IPR015300 -
Psa6g2254 248 SMART B3_2 7 103 IPR003340 GO:0003677
Psa6g2254 248 SMART B3_2 153 239 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2254 Psa-Chr6 161827694 161828820 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2254 153 242 B3 DNA Binding Superfamily AT3G18990 30.928 1.93e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa6g2254 B3 2.9e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2254 - - mtr:MTR_1g035620 214.927