Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2249 ATGAAAATTATCTTATTTTTAGAGTTTAGTTGGGTATTAGGCATCATTCCACTATATTCATTTCTATTTCATTTTTATCTTAATTTGTTTAAAATAATAATTAAAATCTCTTCTAGTTTCATAAACAGCGTTATGGAGGCAAAAGCAAAGACTTTATCAACAATAATGAACAACCAGCAAAATAAGAATATTTTTGCAGCTTCAACTTCTGGTGTTCGTTTCTTTAAAATTATTACCACATCAAATATTCAAGATGGAAAAATAAGACTTCCAAAGTGTTTCATTTCAAAACATAGTAATGATATGCTAAATCCTATATTTTTAAAGACTCCGGATGAAAAAAAATGGGAAATACATACCACTAAAGTTAATGAAGATTTCTGGTTTCAAAAGGGTTGGAAGGAATTTGCAACGTACTATTCATTGGATCATGGAAACGTGATTTTTTTTCACTTTGAGGAAAAATCTAATTTTGTGGTGCATATATTTGACAAGAGTACTCTTGAAATTGAATATCCATTTCATGACAATCAACATGAACAAAACAACATTGTTCAAATCAGTGATGACGATTCGGTTGAAGTTTTGAAGACATCAGAGTCATGCAAAAAGAAAACTAGACCAAAATCACTAATTCCATGTCATCAACCACATAAGAAATCGAGAAGTAACATAAATGAAGATGATGCGTGTGAAGCTGATGGAATAGGCTCCAACTTTGCTAACTTTTCAAAGCATCATGTCCAAGCTAACGAGAACATAGATGGTAACACTAAATTTCAAAAAGAAGAGCGGAAGCACAAGACTCCTAAAACTAATGGAGCATTAAAGAGAAGTAGAAAATTCAAATCCAAAAAGCCTTATTTCACGGTTGTCATGAAATCTTCATATCTCTATAGTCATTTTTTGTATGTTCCACAAAACTTTACAAAAAACTATATGAAGAAAGAGAACAATGATATTCTTCTACAACTAATGGATGGAAGAACTTGGGATGCAAAATTTTATTTTGGAAAAATTAAAGGTGGATGGAAGAAATTTGCAGCTGACAATAAGTTGAAAAAAGGTGATGTGTGTGTTTTTGAGTTGACCAAAAACAAAGAGATTACTTTAAAAGTATTAATATTTCGACTTGAAAACGAGTCGCATCCAACTCTTCCTCAAGAACTGATTCAAAGAGAAAAGGATCGTGTGAAAGAGAAAAATACAAGCCGATCAAAGATGTATAAGCCATTGATGGGAAGATCAAAGCAAACAACAGAGATTGTTGAACTATATGATGTTCCGAATGCGAGGGAGGTGTTAATAGAATTGTATGGTAAGATACTTCATGAGATCCAAAAGGTTCCAAAAGATCATGGGTATCGTAAAGCCGTTGAAAGAATTATAAATGAAAAACTCATGGTTTGTCAAGAAGAAGAAGATTTGAAGAAAATTGAGAGTCGTCTTGGATGTGGTCAAATTGAAGAACTCATTGAAGAGGCTAAGGATGAATTGAAACTAATTGACTATATGATTAAGTAG 1524 0.3189 MKIILFLEFSWVLGIIPLYSFLFHFYLNLFKIIIKISSSFINSVMEAKAKTLSTIMNNQQNKNIFAASTSGVRFFKIITTSNIQDGKIRLPKCFISKHSNDMLNPIFLKTPDEKKWEIHTTKVNEDFWFQKGWKEFATYYSLDHGNVIFFHFEEKSNFVVHIFDKSTLEIEYPFHDNQHEQNNIVQISDDDSVEVLKTSESCKKKTRPKSLIPCHQPHKKSRSNINEDDACEADGIGSNFANFSKHHVQANENIDGNTKFQKEERKHKTPKTNGALKRSRKFKSKKPYFTVVMKSSYLYSHFLYVPQNFTKNYMKKENNDILLQLMDGRTWDAKFYFGKIKGGWKKFAADNKLKKGDVCVFELTKNKEITLKVLIFRLENESHPTLPQELIQREKDRVKEKNTSRSKMYKPLMGRSKQTTEIVELYDVPNAREVLIELYGKILHEIQKVPKDHGYRKAVERIINEKLMVCQEEEDLKKIESRLGCGQIEELIEEAKDELKLIDYMIK* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2249 507 ProSiteProfiles B3 DNA-binding domain profile. 288 379 IPR003340 GO:0003677
Psa6g2249 507 ProSiteProfiles B3 DNA-binding domain profile. 73 166 IPR003340 GO:0003677
Psa6g2249 507 SMART B3_2 289 379 IPR003340 GO:0003677
Psa6g2249 507 SMART B3_2 74 166 IPR003340 GO:0003677
Psa6g2249 507 CDD B3_DNA 73 164 IPR003340 GO:0003677
Psa6g2249 507 Gene3D - 66 167 IPR015300 -
Psa6g2249 507 Gene3D - 268 380 IPR015300 -
Psa6g2249 507 SUPERFAMILY DNA-binding pseudobarrel domain 69 166 IPR015300 -
Psa6g2249 507 PANTHER B3 DOMAIN-CONTAINING 68 378 - -
Psa6g2249 507 Pfam ETC complex I subunit conserved region 425 490 IPR006806 GO:0022904
Psa6g2249 507 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 68 378 - -
Psa6g2249 507 CDD B3_DNA 287 377 IPR003340 GO:0003677
Psa6g2249 507 Pfam B3 DNA binding domain 74 165 IPR003340 GO:0003677
Psa6g2249 507 Pfam B3 DNA binding domain 289 377 IPR003340 GO:0003677
Psa6g2249 507 SUPERFAMILY DNA-binding pseudobarrel domain 282 378 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2249 Psa-Chr6 160585070 160587260 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2249 74 380 B3 DNA Binding Superfamily AT3G18990 27.381 2.54e-36 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa6g2249 B3 2.4e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2249 - - mtr:MTR_1g035460 389.423