Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2243 ATGTTTCTCAAGACTCCAGATGACAAAGAATGGGAAATACATTTAACTAAAAAGGATGGTGATATTTGGATTCACAAGGGTTGGAAGGAATTCGCCGCACATTATTCATTAGATCACGGACATATGCTGTTGTTTCAATACGAGAAAACCTCTCATTTTGAAGTGCATGTATTCGACAAGAGTACCCTTGAAATTGGATATCATGTTTACGGCAATAATCAACAAAAACATAATAACACAAATGAAAATTTGAATGAGCAACCTTCACGCAACAAGACTAGACCAAAACCACAAATTTCAAGTTCTCAACCTCATAAGAAATCGATAATTGACACATGCGAAGAAGTTGGAACAAGTTCCAAATTGCAAAACTCGCCTAAACTTGTTCAAGTTAAAGAGGAGAAGGATGGTTCCACTGAATGCCTAAATGTGAAGCATTATCAGGAGAAGAAGAATTTTACTTCTAAAACTGAAAAAGCTTTAATCAAAGCCAAAAACTACAAATCTGAAAATCCACTTTTCATTGTTGTCATGACATCTTCCTATACTAATCAATATATGTATGTCCCTTTCGATTTCGAACAAAAGTATTTGAAGAAAGATCAAAGCGATATGGTCCTTCGGGTCTTGGGCGATGATAGAACTTGGATTGTTAAATATTGTCAAAGTAGAATAAGTTCTGGATGGAAAATATTTGCTTCTGATAATAATTTGAAAGTCGGAGATGTTTGTCTTTTCGAGATGATCAATTACGACGCCTATGCTTTTAGAGTACTAGTTTTTCGAGTCGACGATGAACAAGGTTCCCCTCCACCACAAGTTCACAGAGATCGAATTAATTGGGTAGAAACAGCAAGAATCTCAAAAGTTGACAGTAAACCTATTATTTTACATCGAGGATTGAAAGCTACTCCAATAAATTCCTTGCAGGCTAGTCCACCCGCCTTTGCAAAAGTTGAAGCGGAACAATTCGCATCGACATTGAAAAATCCTCATTTCACTATCAATTTAAGATCAAGTCATTGGGACGAATACAAACCGCGTATACCGAATTCGTTCTCAAGGAAGTACTTGTGTTACCAAAACAACACTGTGATGTTACAGTTTGATGAAAAAATCTGGCAGGTAGAATTGGTGAGTTATCCATCCGATCTGACGAGAAAGTTGAGTGTAGGTTGGAGTCGGTTTGCAGATGAAAATAAATTGCAGGTGGGAGATGTATGTGTGTTTGAGCTCATCAACAAGGAAGATGCTGTGCTTGATGTTCATATTTTCAGAGGTTGTAATTAG 1290 0.3682 MFLKTPDDKEWEIHLTKKDGDIWIHKGWKEFAAHYSLDHGHMLLFQYEKTSHFEVHVFDKSTLEIGYHVYGNNQQKHNNTNENLNEQPSRNKTRPKPQISSSQPHKKSIIDTCEEVGTSSKLQNSPKLVQVKEEKDGSTECLNVKHYQEKKNFTSKTEKALIKAKNYKSENPLFIVVMTSSYTNQYMYVPFDFEQKYLKKDQSDMVLRVLGDDRTWIVKYCQSRISSGWKIFASDNNLKVGDVCLFEMINYDAYAFRVLVFRVDDEQGSPPPQVHRDRINWVETARISKVDSKPIILHRGLKATPINSLQASPPAFAKVEAEQFASTLKNPHFTINLRSSHWDEYKPRIPNSFSRKYLCYQNNTVMLQFDEKIWQVELVSYPSDLTRKLSVGWSRFADENKLQVGDVCVFELINKEDAVLDVHIFRGCN* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2243 429 Pfam B3 DNA binding domain 174 262 IPR003340 GO:0003677
Psa6g2243 429 Pfam B3 DNA binding domain 345 426 IPR003340 GO:0003677
Psa6g2243 429 Pfam B3 DNA binding domain 2 60 IPR003340 GO:0003677
Psa6g2243 429 Gene3D - 315 428 IPR015300 -
Psa6g2243 429 Gene3D - 153 266 IPR015300 -
Psa6g2243 429 ProSiteProfiles B3 DNA-binding domain profile. 332 428 IPR003340 GO:0003677
Psa6g2243 429 SUPERFAMILY DNA-binding pseudobarrel domain 2 61 IPR015300 -
Psa6g2243 429 SUPERFAMILY DNA-binding pseudobarrel domain 327 426 IPR015300 -
Psa6g2243 429 MobiDBLite consensus disorder prediction 72 108 - -
Psa6g2243 429 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 1 263 - -
Psa6g2243 429 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 317 426 - -
Psa6g2243 429 PANTHER B3 DOMAIN-CONTAINING 317 426 - -
Psa6g2243 429 PANTHER B3 DOMAIN-CONTAINING 1 263 - -
Psa6g2243 429 SMART B3_2 333 428 IPR003340 GO:0003677
Psa6g2243 429 SMART B3_2 174 264 IPR003340 GO:0003677
Psa6g2243 429 ProSiteProfiles B3 DNA-binding domain profile. 1 61 IPR003340 GO:0003677
Psa6g2243 429 SUPERFAMILY DNA-binding pseudobarrel domain 167 263 IPR015300 -
Psa6g2243 429 CDD B3_DNA 331 426 IPR003340 GO:0003677
Psa6g2243 429 CDD B3_DNA 172 262 IPR003340 GO:0003677
Psa6g2243 429 CDD B3_DNA 1 59 IPR003340 GO:0003677
Psa6g2243 429 Gene3D - 1 62 IPR015300 -
Psa6g2243 429 ProSiteProfiles B3 DNA-binding domain profile. 172 264 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2243 Psa-Chr6 159947170 159949980 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2243 321 426 B3 DNA Binding Superfamily AT3G18990 40.367 1.99e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa6g2243 B3 7.1e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2243 - - mtr:MTR_8g103940 560.066