Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2242 ATGAATTCTGAAAACCCAGACTTTCTTTCAGCTCCACCGGGTATCCCTTTCCCAGTTCCATTGCTAACTCCGAAGCAAGAACCTCGCGAGGAACCAGTTCAACACGAACTACAACAAGAACAACAACAGCAACAACCGAACCTCAATGATCTTCCGAGCCTCAATCTTAACCTAAATCTTAACCTCGATGATATTTACGAACAAGAAACCCTACCCGACGGGTTTTCCAACTTTAATCTTCTCTCAGAGGCTTTCCGAACCGGGTTCACTACAGGACTACAACAGCTCGAAAACGACGTCGTTGTTGAAGTAGTTGATGATCCTAATTCACGCGCCATCGTTCCCGTTCCCGAGGCGCGTCAGAGTTACGACAACAATGGTCCGGCGGGGGCGGGGGAAGTTGCGGCGCAGAGGATTCAACGGCGTTACAAGGAGCTGGTTCGCGTGGCGGATCTTGGTTTAGCGGAGCAGCGTCAGTTTCGTGACCTTGTGAGAAGGACGAGAATGGTTTACGATTCGCTTCGTGTTTTGGCTTTGATTGAGGAAGAGAAGAGAAGTGATGTTCGGAAAGTGAGAAGTGATCTGAGAGCTTCTGCTTTGATGAGAAACAGAGGTTTGTGGCTGAATCGTGATAAGAGAATCGTTGGTCCGATTCCTGGTATTTGTATAGGTGATGTGTTTCTTTATAGAATGGAGTTGGTTGTGATTGGTTTACATGGTCAACCACAAGCTGGGATTGATTATTTACCTGCTAGTATGAGTTCGAACGGCGAACCGATTGCTACTAGTGTGATTGTTTCCGGTGGATATGAAGATGACGTCGATGAAGGCGATGTTATTATCTATTCTGGTCATGGTGGTCAGGATAAGAATTCAAGGCAGGTTTTTCATCAGAAGTTGGAAGGCGGGAACCTTGCGATGGAGAGAAGTATGCATTATGGGATTGAGGTTAGGGTTATTCGCGGTGTTCGGTATGAGGGTACGTCTTCGGCTTCTGGTAAGGTTTATGTTTATGATGGCTTGTATAGGATTGTTGAATATTGGTTTGATATTGGAAAATCTGGTTTTGGTGTTTATAAGTTTAAGCTATGGAGGATTGATGGACAAGCTAAGATGGGTAGTTCGATTCTTAAGGAGGCTCTTATGCTTAGGAGGGATCCTTTGTGTTTTAAACCTATGTGTGTTTTTTCACTTGATATTTCCAATAGGAATGAGAATGTTGGTGTGAGGCTTTATAATGATATTGATAGAAGTAATGATCCGATGTGTTTTGAGTATCTCCCGAGGGCTACTTTTCCGCCGTTTGTGTTTCATCAGAGTGGGAGGGTGACGGGTTGTGATTGCGTGAACGGTTGCGTTGAAGGATGCTTTTGTTTCATGAAGAATGGAAATGAGTTTCCTTATAGTCAAAGTGGGCTTCTCTTGAAAGGGAGATCGATAGTCTTTGAATGCGGTCCTTTTTGTCGTTGTCCGCCTAATTGTCGTAACCGTGTTACGCAAAAAGGGCTAAAAAATAGGTTGGAAGTGTTTAGATCTAAGGAGACTGGTTGGGGAGTTAGGTCTTTGGACCTTATTCAAGCTGGTGCTTTTATATGTGAATACACCGGGGTTGTTTTGACTAGGGAGCAAGCACAGATTTTGATCATGAATGGTGATTCATTGATATATCCGAATCGGTTTTCGAATAGGTGGGAAGAATGGGGTGATTTATCTTTGGTAGACCCTAGTTATGTGCGCCCGACGTATCCATCAATTCCTCCTTTAGATTTTGCTCTGGACGTGTCAAGAATGAGGAATGTTGCGTGCTACATGAGTCATAGCTCAACTCCCAATGTGTTGGTTCAGTTTGTTCTATATGATCACAATAATTTGATGTTCCCTCACCTTATGCTATTTGCAATGGAGAACATCCCTCCAATGAGAGAATTCAGCCTTGATTATGGGGTAGCTGATGATGAGTTGACTGGCAAGCTCGCTATATGTAACTGA 1989 0.4389 MNSENPDFLSAPPGIPFPVPLLTPKQEPREEPVQHELQQEQQQQQPNLNDLPSLNLNLNLNLDDIYEQETLPDGFSNFNLLSEAFRTGFTTGLQQLENDVVVEVVDDPNSRAIVPVPEARQSYDNNGPAGAGEVAAQRIQRRYKELVRVADLGLAEQRQFRDLVRRTRMVYDSLRVLALIEEEKRSDVRKVRSDLRASALMRNRGLWLNRDKRIVGPIPGICIGDVFLYRMELVVIGLHGQPQAGIDYLPASMSSNGEPIATSVIVSGGYEDDVDEGDVIIYSGHGGQDKNSRQVFHQKLEGGNLAMERSMHYGIEVRVIRGVRYEGTSSASGKVYVYDGLYRIVEYWFDIGKSGFGVYKFKLWRIDGQAKMGSSILKEALMLRRDPLCFKPMCVFSLDISNRNENVGVRLYNDIDRSNDPMCFEYLPRATFPPFVFHQSGRVTGCDCVNGCVEGCFCFMKNGNEFPYSQSGLLLKGRSIVFECGPFCRCPPNCRNRVTQKGLKNRLEVFRSKETGWGVRSLDLIQAGAFICEYTGVVLTREQAQILIMNGDSLIYPNRFSNRWEEWGDLSLVDPSYVRPTYPSIPPLDFALDVSRMRNVACYMSHSSTPNVLVQFVLYDHNNLMFPHLMLFAMENIPPMREFSLDYGVADDELTGKLAICN* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2242 662 Pfam Pre-SET motif 400 497 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa6g2242 662 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 48 662 IPR025794 GO:0016571
Psa6g2242 662 MobiDBLite consensus disorder prediction 37 51 - -
Psa6g2242 662 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 22 658 - -
Psa6g2242 662 SUPERFAMILY PUA domain-like 197 378 IPR015947 -
Psa6g2242 662 SUPERFAMILY SET domain 390 649 IPR046341 -
Psa6g2242 662 Pfam SAD/SRA domain 215 369 IPR003105 -
Psa6g2242 662 SMART set_7 505 654 IPR001214 GO:0005515
Psa6g2242 662 MobiDBLite consensus disorder prediction 1 51 - -
Psa6g2242 662 ProSiteProfiles SET domain profile. 505 648 IPR001214 GO:0005515
Psa6g2242 662 Pfam SET domain 516 648 IPR001214 GO:0005515
Psa6g2242 662 ProSiteProfiles Pre-SET domain profile. 444 502 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa6g2242 662 MobiDBLite consensus disorder prediction 11 25 - -
Psa6g2242 662 Gene3D - 213 373 IPR036987 -
Psa6g2242 662 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 22 658 - -
Psa6g2242 662 SMART G9a_1 211 369 IPR003105 -
Psa6g2242 662 SMART preset_2 397 489 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa6g2242 662 Gene3D SET domain 374 661 IPR046341 -
Psa6g2242 662 ProSiteProfiles YDG domain profile. 216 365 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2242 Psa-Chr6 159934633 159939630 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2242 161 650 Su(var)3-9 homologs AT5G04940 37.827 1.25e-101 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa6g2242 SAD_SRA 8.9e-48 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2242 K11420 - gmx:100804592 926.391