Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2240 ATGGCTGCTTCTTCATCTTCTACACCTTTCTTGGAAATCAGACAAGAAAATCAAAGTCTGATAACACAACAACATCAATCTTCTACCGACGTTTCATCAACCGCTGCTCAACCTTTAGTGCCAAAAAAAAGAAGAAATCAACCAGGAACACCATATCCAGATGCAGAAGTGATAGCACTATCTCCAAAGACATTAATGGCCACAAACAGATTTGTATGTGAAGTGTGTCAAAAAGGGTTTCAAAGAGAGCAAAATTTGCAGCTTCATAGAAGAGGACACAATCTACCATGGAAGCTAAAGCAGAAGAGTAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCAGAGCCTTCTTGTGTTCACCATGACCCTTCAAGAGCTCTTGGAGACCTCACTGGAATCAAGAAGCACTTTTCTAGAAAGCACGGTGAGAAAAAGTGGAAATGTGAAAAGTGTTCTAAGAAATATGCTGTTCAGTCTGATTGGAAAGCTCATTCTAAAACTTGTGGCACTAGAGAGTATAGATGTGACTGTGGCACTCTCTTCTCAAGGCGTGATAGTTTCATTACTCATAGGGCATTTTGTGATGCACTAGCACATGAAAATGCAAGACACCCTTCCAACATGAACCCTTTAGCAACACATCTATTTTCCACAAACCACATAGGTTTAGCCCTAAACCAAAACCAACAAACATCCACAAACAACATCTTAACCCTAGGAAACATCCCTTGTACACCAAAATATGAACATCATTTGATCTCACCTTTGCATCCATCATCATCATCATTTGTTCAACAACAACAACAACAATCACCACAACAACAATCAATGTCTTCTTCACCTTTCTTCATCAACGATCCAAATCAAACTTTCCAACAAGACCTTTCTTCACCATTCTCAAACAAACAACTTCATCTTCATCATGGTCTCTTGCAACTTCCTGATCTTCAAGGAAACACCAATAATAACACGAATTCATCATCGGTGTCGCCTTTTAACCTAAGCTTCTTTCCGAATACCAATAGCAGCACAATGCATGATCAGTTCAACAACATAAGCGAACCTCATCATCATCATCATCATCATCATCATCACCAGCAGCATCACCAAGAAGGCTTTTCTTCACTCTTTGGTAATTCATCAATGCAACAAGAGAACATGTTGTCCTCACCGCACATGTCAGCAACTGCATTGCTTCAAAAAGCTGCTCAAATAGGTTCAACAACAACAACTACTATCAATAACAACGGTGTGGAATCTAATAATGAAGGATTAAGATCAAGCATGGAAAATGAACACAACCAACATCTACATGGATTGCTAAACTCTCTTGGGAATGGAAACACTTCAATATATGGAGATATGAATCATGACAACAACATTAACCTTGGTCAGTTTCAGAATATGGAGGAGAACAAAAAGTTGCCACAACAAAACCTAGCTGGTAATTTGTGCTTTGGAGGATCAGATAAATTGACTTTGGATTTTCTTGGAGTTGGAGGAATGGTGAGAAACATGAGTGGTGGATTTTCACAAAGAGAACAGCAACTACACTCCATGAGTAATATGAACAACATGGATCCTAAATTGGAATCAACACAAGCAAACCAACCTTTTTGA 1623 0.3894 MAASSSSTPFLEIRQENQSLITQQHQSSTDVSSTAAQPLVPKKRRNQPGTPYPDAEVIALSPKTLMATNRFVCEVCQKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHENARHPSNMNPLATHLFSTNHIGLALNQNQQTSTNNILTLGNIPCTPKYEHHLISPLHPSSSSFVQQQQQQSPQQQSMSSSPFFINDPNQTFQQDLSSPFSNKQLHLHHGLLQLPDLQGNTNNNTNSSSVSPFNLSFFPNTNSSTMHDQFNNISEPHHHHHHHHHHQQHHQEGFSSLFGNSSMQQENMLSSPHMSATALLQKAAQIGSTTTTTINNNGVESNNEGLRSSMENEHNQHLHGLLNSLGNGNTSIYGDMNHDNNINLGQFQNMEENKKLPQQNLAGNLCFGGSDKLTLDFLGVGGMVRNMSGGFSQREQQLHSMSNMNNMDPKLESTQANQPF* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2240 540 MobiDBLite consensus disorder prediction 1 40 - -
Psa6g2240 540 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Psa6g2240 540 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 517 - -
Psa6g2240 540 MobiDBLite consensus disorder prediction 1 52 - -
Psa6g2240 540 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Psa6g2240 540 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 517 - -
Psa6g2240 540 Pfam Zinc finger, C2H2 type 71 93 IPR013087 -
Psa6g2240 540 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Psa6g2240 540 Gene3D Classic Zinc Finger 125 204 - -
Psa6g2240 540 Gene3D Classic Zinc Finger 54 119 - -
Psa6g2240 540 MobiDBLite consensus disorder prediction 259 279 - -
Psa6g2240 540 SMART c2h2final6 147 167 IPR013087 -
Psa6g2240 540 SMART c2h2final6 71 93 IPR013087 -
Psa6g2240 540 SMART c2h2final6 112 142 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2240 Psa-Chr6 158812752 158817666 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2240 42 509 IDZ Gene Family AT2G02070 45.866 3.79e-118 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa6g2240 zf-C2H2 0.0051 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2240 K25870 - gmx:100806198 629.017