Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2239 ATGGGGAAAGAAGAATTCAATCCATTTGGGAGGCCTTACAATTTTATGGTGCCTCAAGATCAAACTCCAAACCAACCTATGCCCCCACATTGGTCTACAACTATGCAGGCTTATTACAATCCCGGGTCTGCTCCAAATCCCTTTTATAATCCACTTGCAGCTGGTCCTTACTTGTATCAGCAGTACATGTGGCAGAATCAGGCAAACAATGCACTACTTCATTATGATGCTCTAAACGATCCCGCTAGGCTCTCCAATAAACCTCCTGTAGCTAAGGATGCTACACTGGCCTTTTCAGAAATGGTACGCAGGAATATTGGCGAAGGAAAGCAAGATTTCAACAAATTATTTGCTGGAAACTCACAACCTTTAAGTTTAATAACTGGGGATTTGAGAGAATATGGAAACACATCTTCAGCACCAAAAAATGTCAGGGATGGAACCTCAATAAGTGTACCAAGTGGAAGCAAGAGATCACCAGAAGAAGAACAAGAGGGCACTAACAATGTTTTTCCTTCAAGTTTGACACTGAAACCAAACATGATTATTGGGGATGAAAATCCATCTGGGCTGACTCAAAATTTGGAGACATTTGCAAAGGAATCTGATGCTGATGCTGAGACTCAACTAAAAAATATGGAAGGTAGTGATGATATAAGAAAAGAAAGGAAAAGACAGTCAAACAGGGAATCAGCTAAGAGGTCAAGGATACGAAAACAGCAAGAATGTGAAGAGCTATCTAAAACGATAGATACTCTTAAGGATGAAAATTCCGTCCTAACACAAAGGCTCGTTACACTTTCTGAGGAATGTCAGGAGCTCACCATTGAAAACAATTCCATTGAGGAAGAGCTAGTTAAGAGGTATGGATCAGAATCAATTGCAGACCTATTGCTCATGAAGCCTGTTTCTGGTGGATTCCCAAAATCAGTTTGA 936 0.406 MGKEEFNPFGRPYNFMVPQDQTPNQPMPPHWSTTMQAYYNPGSAPNPFYNPLAAGPYLYQQYMWQNQANNALLHYDALNDPARLSNKPPVAKDATLAFSEMVRRNIGEGKQDFNKLFAGNSQPLSLITGDLREYGNTSSAPKNVRDGTSISVPSGSKRSPEEEQEGTNNVFPSSLTLKPNMIIGDENPSGLTQNLETFAKESDADAETQLKNMEGSDDIRKERKRQSNRESAKRSRIRKQQECEELSKTIDTLKDENSVLTQRLVTLSEECQELTIENNSIEEELVKRYGSESIADLLLMKPVSGGFPKSV* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2239 311 Pfam G-box binding protein MFMR 19 67 IPR012900 -
Psa6g2239 311 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 303 IPR044827 GO:0003700|GO:0006355|GO:0043565
Psa6g2239 311 MobiDBLite consensus disorder prediction 136 157 - -
Psa6g2239 311 SMART brlzneu 216 280 IPR004827 GO:0003700|GO:0006355
Psa6g2239 311 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 223 238 IPR004827 GO:0003700|GO:0006355
Psa6g2239 311 Pfam bZIP transcription factor 219 278 IPR004827 GO:0003700|GO:0006355
Psa6g2239 311 CDD bZIP_plant_GBF1 221 272 IPR045314 GO:0003700|GO:0006355
Psa6g2239 311 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 218 281 IPR004827 GO:0003700|GO:0006355
Psa6g2239 311 Coils Coil 229 284 - -
Psa6g2239 311 SUPERFAMILY Leucine zipper domain 219 274 IPR046347 GO:0003700|GO:0006355
Psa6g2239 311 PANTHER BZIP TRANSCRIPTION FACTOR 1 303 - -
Psa6g2239 311 MobiDBLite consensus disorder prediction 201 240 - -
Psa6g2239 311 Gene3D - 207 279 - -
Psa6g2239 311 MobiDBLite consensus disorder prediction 136 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2239 Psa-Chr6 158116815 158124374 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2239 29 297 bZIP Transcription Factor Family AT4G36730 27.645 6.28e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Psa6g2239 bZIP_1 1.9e-15 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2239 K09060 - gmx:102665715 290.041