Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2202 ATGAACACTGTTGGGCCAGGAGGAATGGATATACCGATTATGCATGAGAGTGATAGGTATGAGCTTGTTCGTGATATTGGGTCTGGGAATTTTGGGGTGGCTAGGCTTATGACAGATAAACACACTAATCAGCGTGTTGCTGTCAAGTATATTGAGAGAGGTGATAAGATTGATGAAAATGTACAAAGGGAAATTATAAATCATAGATCACTGAGGCATCCCAATATTGTCAGGTTCAAGGAGGTAATACTTACCCCTACACATTTAGCTATTGTGATGGAATATGCTTCTGGAGGAGAGCTATTTGAGCGAATATGCAATGCAGGACGGTTCAGTGAGGACGAGGCACGGTTTTTCTTTCAACAGCTAATATCAGGGGTTAGCTACTGTCATGCAATGCAAATATGTCATCGTGACTTGAAGTTGGAGAACACGTTGTTGGACGGTAGTCCGGCTCCTCGTTTGAAGATTTGTGATTTTGGGTATTCAAAGTCATCAGTGCTACATTCGCAACCAAAATCTACCGTCGGTACACCTGCATATATCGCTCCTGAAGTTTTGCTTAAGAAGGAATATGATGGCAAGATTGCAGATGTGTGGTCTTGTGGTGTTACCTTATATGTCATGTTGGTTGGTGCATATCCTTTCGAGGATCCGGATGAGCCTAAGAATTTTCGGAAGACTATTCATAGGATTTTGAAAGTCCAATACTCAATTCCTGATTATGTTCAAATATCTCCCGAGTGCCGTCATCTGATCTCAAGGATCTTCGTTGCAGACCCTGCACAGAGAATAAGTATGCCTGAGATTCGAAACCACATGTGGTTTTTGAAGAACCTTCCTGCGGATCTTATTGTCGGAAATACAATGAACGACCAATTTCAAGAGCCTGAACAACCGATGCAGACCGTTGAAGAAATCATGCAGATAATTAGCGAAGCTACTATTCCTGCAGCTGGAACTCATCAGTCTCTCAACCAGTATCTTACCGGTAGTTTGGACATTGATGATGAAATGGACGAGGATGTGGAAACCGATCCCGACCTTGATATCGATAGCAGCGGTGAAATAGTTTATGCAATGTAA 1086 0.4236 MNTVGPGGMDIPIMHESDRYELVRDIGSGNFGVARLMTDKHTNQRVAVKYIERGDKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPDEPKNFRKTIHRILKVQYSIPDYVQISPECRHLISRIFVADPAQRISMPEIRNHMWFLKNLPADLIVGNTMNDQFQEPEQPMQTVEEIMQIISEATIPAAGTHQSLNQYLTGSLDIDDEMDEDVETDPDLDIDSSGEIVYAM* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2202 361 SUPERFAMILY Protein kinase-like (PK-like) 14 306 IPR011009 -
Psa6g2202 361 Gene3D Phosphorylase Kinase; domain 1 3 95 - -
Psa6g2202 361 Pfam Protein kinase domain 20 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g2202 361 PANTHER SERINE/THREONINE KINASE 12 356 - -
Psa6g2202 361 Gene3D Transferase(Phosphotransferase) domain 1 96 284 - -
Psa6g2202 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Psa6g2202 361 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Psa6g2202 361 SMART serkin_6 20 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g2202 361 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2E 12 356 - -
Psa6g2202 361 CDD STKc_SnRK2 19 275 - -
Psa6g2202 361 ProSiteProfiles Protein kinase domain profile. 20 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2202 Psa-Chr6 155447256 155450294 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2202 19 306 CBL-interacting serine-threonine protein kinases AT5G25110 42.333 6.46e-69 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Psa6g2202 Pkinase 3.6e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2202 K14498 - gmx:100804702 677.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g2202 6 155447256 155450294 Psa6g2202 6 155447256 155450294 ECH