LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa6g2173	ATGGGCTCGGTGGAGAACTATCATGTGATCGAGCTAGTCGGCGAAGGCTCCTTCGGCAAAGTCTACAAAGGGAGACGCAAGCACACTGGACAGACTGTTGCGATGAAGTTCATAATGAAGCACGGTAAAACTGAAAAGGATATTCACAATTTGAGGCAAGAAATCGAGATATTAAGGAAGTTGAAGCATGGAAATATTATTCAAATGCTTGATTCCTTTGAAAGCCCGCAAGAGTTTTGTGTTGTCACAGAATTCGCACAAGGCGAGCTATTTGAGATAATTGAGGATGACAAATGCCTTCCCGAAGAACAAGTTCAAGCAATTGCAAAGCAATTGGTAAGAGCCTTACATTATTTGCATTCCAACCGGATCATCCATCGTGATATGAAGCCCCAAAATATCCTCATCGGTTCTGAATCTATTGTCAAGCTTTGTGATTTTGGGTTTGCACGTGCAATGTCCACAAACACAGTTGTTTTGCGATCTATAAAAGGCACTCCATTATACATGGCTCCAGAACTTGTCCGGGAACAACCTTACAACCACACAGTAGATTTATGGTCTCTTGGTGTTATATTGTACGAGTTATTTGTAGGCCAACCACCATTTTACACAAATTATGTTTATACTCTCGTCAGGCGCATTGTTAACGATCCGGTTAAATATCCTGATAGCATGACTCCAAATTTCAAAAGCTTTTTAAAGGGTTTGCTTAACAAGGCACCCGAAAGTCGACTAACTTGGCCTGCGCTTCTTGAACACCCATTTGTTAAAGAAACTAACAACGAAATTGAGGCCAGGGAACGGCATGAGATAAGTTGTTCGCCAAAGGACAGCGATACAACACAGGGGGTCGAAAGAAAAATTATTCAAACTTCAACAGAACGCACAACAGGTTTAGTGGAGCATATTGCTTCACCACTTCAGAATGAAACTCAGTTAAATGGTCCTAACATGAAAAAAACCAATTCTAAAGTGCTTGACGAGTCTCCTGGATTTTCAAATCAAAATGATGTAGTAGAGTCAGGCTGCCAAAGACTGGACAGACTTGAAAGTAACTCTCAAACTGTCGAAGGTGCAAAAGTAATTGGTCAAGACAATGAAGCATTGGGATTTGTTCTGCAACCTCTGAAAAGATGGTCGAAGGGATCTCAAAATATTTGCAGTGATCAAGATCTTCCTGCTTCAAACCAGTCATTAAGAATTCTCTCAAAACTAGTTGCTGCCGGTGTCTTCAGTTCTACTGGGCAAATAGACGAGCTCATAAGCGAGCTTCTTTTGTTTAGCAGATCTGTTGTATCAACGAAATCTGCTGAAGTTTTTGACCTGTTAACAAAGGGTTTCTCTATCACCAAAATTTTGCTAGATAATGGTGGGAAATTCTTTTCAAACTCATATTTAAATCAATGGGTTGAATTGGTTGAAATCTATTCTCAGGTTGTAACTTTGACAAATGATGCTTCTGGAAGAGTTCTGTATGAGTCAAGTGCCTGCATTACAGTCATGTTGTCTAAAGTTGCTCAGGTGCTTAGATCATCTCAAATTTCAAGCTCAGAGACACTGAACGAAACGGCTAACAGAATTATAGAGCATGCAAAAACATCTGGTTTAATTGACCATTTGTGCTCGTGCTTAGCAACTTCTGGTTCGGGTCTTATTGCAGGTTCTTCCAATATGCTACAGGCTGCTTCTGAAGCATGCAGGGCTGCGTGGTCTTTGATTGATGCTCTGGATGTCCTTTTTATGAGAAAAAGTGCCATTTTGTTTCCCATTAGTGCATTGCAGAGTCATTTTTCGCAGAGGACAGAAATTATGGATCACATAAAAGATCCCTTGTTTGATGAAGAATCAACAAAAATGGTTGATGTAATGGCAAGAGCATTTCTGAGATCCAAAGCTGTTCAGGTTGCTGTGTACTACTGTTTTCACCAACGGATTGAGTCTGCAACAATTTGTGGTCTTCAGCTTTTGTCAAGGTGCTGCCTCCATAATGGAATTGTTCCATCCGTCCTTTGTGGTCTGCCCGGTTCCCTTCCTGTGACTACTGTTGTAAGTGGTGGTGGTGACCGAACTATTGTTTCAGAGATTTTCTCAGTTTTGTCAATATGCAGTTCCTCTCTCAACAAAGATGCACACACTGTAGAACCAAGTAACACTAAATGCAAATTAGCAAATCCTTCTGCTCTGATTTGTCATTCATGTACCATTCTCACAATAATTGCACAATGTTTGAAGTCAACTGGAAGAAATTCTGCAATTTTTATGCTCACCACCTCACCAAAGAAGCAGCTTGCTCGACTCTCTGTTCTTGCTCGTCACGTTTCTTATGATGATAAAACAAAAGCCTCTTTCCAACTTCAAAGTGCATCAGCTATGTTGGCTTTGGCGTCCATTCTTTCCCTCGAATCTGGAACTTCGGTTGAGTCTTCGATATCTGAAATTGCCATGCCCTTAATTCCCCGAACTTCTACACTAAGTGACCATCTTAAGTTTTCACCAGGAAATGAAAATCAACAGGACCATGGAAATTTTAATGGGAAGCTCCCATATTGGCTAAGGGTAAAAGATGGGTCTGTTGGTCTTTTAGATTCCAAACTCAAGTGGGGAGGACCATTAGCTGTTCAGCAGTTGTGTGCAAGTGGTATACCTCTTCTTCTTATAGGCTTATTAAGCAATGGGTTTTTAAATGCTTATCAAGAAAACGAGTGCCAAAACGATAAAGGTGGATTGTCTCCTATTGGTGTTGTGTGCACAATTTCGTCATTATGTCGTTGTCTCTCTGGCGGCACTTTGATTTTTCGTCAGATTTTAATTAGGAGTGAACATGTTAAGCTCATATCCAACTTAATATGCGATGTTCATCTTAAGTTGATAAAATTCTGGACTGGACCTGGTGGAGGGAATGCAGGAGTCAGAGATCTAATAAATGCAGTCATAGATCTCTTAGCATTTCCTTTTGTTGCTCTTCAAAATGCACATGGCTTGCCATCAGCCACTGCTTCTGTTAGCAGTGGGTTTCTTCTTAATGTTGGTTCCCCTGGTCAGAGAGTATGCGTGGAAGACAATGATACAGTTAAGGCAATAGAAGAAGACATGGGAAAATACATTAAGATCCTTATGGAGGTTGGTGTGCCTAGTATTATCCTTCAATGCCTAGATCATATGGAGTTGAATGATTTGGGCAGGCCTGTGGCCTTTCTTGCTAAAATGGTGTGCCAACGACCTTTAGCAGTCCAACTTGTGAGTAAAGGTCTTTTGGATCCAAATAGGATGAAAAGGTTGTTCGACCTTTCGGCACCAAAAGAGGTTATGCTGGATGCTCTTATGATCATTTCCGATCTTGCTCGTATGGACAAGGGGTTCTATGAATACATTAAATGTGCTTCTGTTTTGGAGTTCTTAAAAAGTTTTCTTTCACACGAGGATCCAAATATGCGTGCCAAAGCTTGCAGTGCTCTTGGAAACATGTGCCGTCACAATGCCTTTTTTTACAGTTCTCTTGCAAGATATCAAATAGTTAGTATCCTTATTGACCGATGCTCTGATCCGGACAAACGAACAAGGAAATTTGCTTGTTTTGCTATCGGAAATGCGGCTTACCACAATGATGTGCTGTATGAAGAGCTGAGGAGGTCGATTCCTCATCTGGCAAATTTGTTGCAAAAAACAGAGGAGGACAAGACCAAGGCAAATGCAGCAGGTGCACTTAGCAATCTGGTTCGCAACTCTGACAGACTTTGTGAAGACATTTTGTCTGAAGGAGCCGTTCAGTCTCTCCTGAAGTTAATTTCCGATTATGCGGTATCAGCACTAAATCCAAGCAGAAATGATTCAACAAACGAGTCTCCTTTAAAGATTGCTCTCTTTTCCCTTGCAAAGATGTGTGCTCATCCACTCTGCAGGCAGTTCATCAGTTCATCACATTTGTTCCCTGTAATTGGAAGGCTTCTACAGTCTCCAGAATCATCCATTGCCAAATATGCATCAGTGATCATTAACAAAGTTGCTGAACCTTGA	4017	0.4103	MGSVENYHVIELVGEGSFGKVYKGRRKHTGQTVAMKFIMKHGKTEKDIHNLRQEIEILRKLKHGNIIQMLDSFESPQEFCVVTEFAQGELFEIIEDDKCLPEEQVQAIAKQLVRALHYLHSNRIIHRDMKPQNILIGSESIVKLCDFGFARAMSTNTVVLRSIKGTPLYMAPELVREQPYNHTVDLWSLGVILYELFVGQPPFYTNYVYTLVRRIVNDPVKYPDSMTPNFKSFLKGLLNKAPESRLTWPALLEHPFVKETNNEIEARERHEISCSPKDSDTTQGVERKIIQTSTERTTGLVEHIASPLQNETQLNGPNMKKTNSKVLDESPGFSNQNDVVESGCQRLDRLESNSQTVEGAKVIGQDNEALGFVLQPLKRWSKGSQNICSDQDLPASNQSLRILSKLVAAGVFSSTGQIDELISELLLFSRSVVSTKSAEVFDLLTKGFSITKILLDNGGKFFSNSYLNQWVELVEIYSQVVTLTNDASGRVLYESSACITVMLSKVAQVLRSSQISSSETLNETANRIIEHAKTSGLIDHLCSCLATSGSGLIAGSSNMLQAASEACRAAWSLIDALDVLFMRKSAILFPISALQSHFSQRTEIMDHIKDPLFDEESTKMVDVMARAFLRSKAVQVAVYYCFHQRIESATICGLQLLSRCCLHNGIVPSVLCGLPGSLPVTTVVSGGGDRTIVSEIFSVLSICSSSLNKDAHTVEPSNTKCKLANPSALICHSCTILTIIAQCLKSTGRNSAIFMLTTSPKKQLARLSVLARHVSYDDKTKASFQLQSASAMLALASILSLESGTSVESSISEIAMPLIPRTSTLSDHLKFSPGNENQQDHGNFNGKLPYWLRVKDGSVGLLDSKLKWGGPLAVQQLCASGIPLLLIGLLSNGFLNAYQENECQNDKGGLSPIGVVCTISSLCRCLSGGTLIFRQILIRSEHVKLISNLICDVHLKLIKFWTGPGGGNAGVRDLINAVIDLLAFPFVALQNAHGLPSATASVSSGFLLNVGSPGQRVCVEDNDTVKAIEEDMGKYIKILMEVGVPSIILQCLDHMELNDLGRPVAFLAKMVCQRPLAVQLVSKGLLDPNRMKRLFDLSAPKEVMLDALMIISDLARMDKGFYEYIKCASVLEFLKSFLSHEDPNMRAKACSALGNMCRHNAFFYSSLARYQIVSILIDRCSDPDKRTRKFACFAIGNAAYHNDVLYEELRRSIPHLANLLQKTEEDKTKANAAGALSNLVRNSDRLCEDILSEGAVQSLLKLISDYAVSALNPSRNDSTNESPLKIALFSLAKMCAHPLCRQFISSSHLFPVIGRLLQSPESSIAKYASVIINKVAEP*	1339

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa6g2173	1338	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	124	136	IPR008271	GO:0004672\|GO:0006468
	Psa6g2173	1338	Gene3D	Transferase(Phosphotransferase) domain 1	2	327	-	-
	Psa6g2173	1338	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	1211	1244	IPR000225	GO:0005515
	Psa6g2173	1338	PANTHER	PROTEIN KINASE RELATED	1	1336	IPR045193	GO:0004674
	Psa6g2173	1338	Coils	Coil	1206	1226	-	-
	Psa6g2173	1338	Pfam	HEAT repeats	1132	1236	-	-
	Psa6g2173	1338	Pfam	Protein kinase domain	7	257	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa6g2173	1338	Gene3D	-	1041	1336	IPR011989	-
	Psa6g2173	1338	SMART	arm_5	1118	1158	IPR000225	GO:0005515
	Psa6g2173	1338	SMART	arm_5	1242	1296	IPR000225	GO:0005515
	Psa6g2173	1338	SMART	arm_5	1201	1241	IPR000225	GO:0005515
	Psa6g2173	1338	ProSiteProfiles	Protein kinase domain profile.	7	257	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa6g2173	1338	ProSitePatterns	Protein kinases ATP-binding region signature.	13	40	IPR017441	GO:0005524
	Psa6g2173	1338	CDD	STKc_STK36	5	257	-	-
	Psa6g2173	1338	Coils	Coil	41	61	-	-
	Psa6g2173	1338	SUPERFAMILY	Protein kinase-like (PK-like)	5	301	IPR011009	-
	Psa6g2173	1338	SMART	serkin_6	7	257	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa6g2173	1338	SUPERFAMILY	ARM repeat	1031	1335	IPR016024	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa6g2173	Psa-Chr6	150990111	151015286	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa6g2173	4	268	AGC Kinase Gene Family	AT3G08720	36.630	1.27e-45	170

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	ULK_Fused	Psa6g2173		Pkinase	2.8e-77	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa6g2173	K06228		-	gmx:100792102	2108.95