Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2170 ATGGGTTCTGTGGAGAACTACCACGTGATAGAGCTAGTCGGCGAGGGCTCCTTCGGCAAAGTCTACAAAGGGAGACGCAAGCACACTGGACAGACTGTTGCGATGAAGTTCATAATGAAGCACGGTAAAACTGAAAAGGATATTCACAATTTGAGGCAAGAAATCGAGATATTAAGGAAGTTGAAGCATGAAAATATTATTCAAATGCTTGATTCTTTTGAAAGCCCACAGGAGTTTTGTGTTGTCACAGAATTCGCACAAGGTGAGCTATTTGAGATTCTTGAGGATGACAAATGCCTTCCAGAAGAACAAGTTCAAGCAATTGCAAAGCAATTGGTAAGAGCCTTACATTATTTGCATTCCAACCGGATCATCCATCGTGATATGAAGCCGCAAAATATCCTCATTGGTTCCGAATCTATTGTCAAGCTTTGTGATTTTGGGTTTGCACGTGCGATGTCCACAAACACAGTTGTTTTGCGATCTATAAAAGGCACTCCATTATACATGGCTCCAGAACTTGTCCGTGAACAACCTTACAACCACACAGTAGATTTATGGTCTCTTGGTGTTATATTGTATGAGTTATTTGTAGGCCAACCACCATTTTACACAAACTCTGTTTATGCTCTCATCAGACACATTGTTAAGGATCCGGTTAAATATCCTGATAGCATGACTCCAAGCTTCAAAAGCTTTTTAAAGGGTTTGCTTAACAAGGCACCAGAAAGTCGACTAACTTGGCCTGCTCTTCTTGAACACCCATTTGTTAAAGAAACTAACAACGAAATTGAGGACAGGGAACTGCATGAGAAAAGTGGTTCGCCAAAGGACAGTGATACAACACAGAGGGTTGACAGAAAAACCATTCAAACTTCAACAGGAAAAAACAATCACAAAACAGGTTTGACAGAGCATATTTCTTCACCACTTCAGAATGAAGCTCAGTTAAATGGTCCTAACATGAACAAAACCAATTCTAAAGTGCTTGATGAGTCTCCTGGATTTTCAAACCAAAATGATGTAGCAGAGTCAGGCTGCCAAAGACTGGACAGACTTGAAAGTAACTCTCGCACTGTTAAAGGTGCAAAAGTAATTGGTCAAGACAATGAAGCATATGGATTTGTTCTACAACCCCTGAAAAGATGGTCGAAGGGATCTCAAAATATTTGCAGTGATCAGGATCTTCCTGCTTCAAACCAGTCACTAAGAATTCTCTCAAATCTAGTTGATGCCGGTGTCTTCAATTCTACTGGACAAATAGACGAACTCATAAGTGAGCTTCTTTTGTTTACCAGATCTGTTGTAGCAATGAAGTCTGCTGAAGTTTTTGACCTGTTAACAAAGGGTTTCTCGATCACCAAAGTTTTGCTAGATATTGGTGGGAAATTCTGTTCAAACTCATATGCAAACCACTGGGTTGAATTGGTTGAAATCTATTCTCAGGTTGTAACTTCTACAAATGATGCATCTGGAAGAGTTCTGTATGAGTCTAGTGCTTGCATTACAGTCATGTTGTCTAAAGTTGCTCAGGTGCTTAAATCATCTCAAATTTCAAGCTCAGAGACACTGAACGAAACAGCTAACAGAATTATAGAGCATGCGAAAACATCTGGTTTAATTGACCATTTGTGCTCGTGCTTAGCGACTTCAGGTTCAGGTCTTATTGCAGGTTCTTCCAATATGCTACGGGCTGCTTCTGAAGCATGCAGGGCTGCGTGGTCTTTGATTAATGCTCTGGATGTCCTTTTTAAGAGAAATAGTGCCATTTTGTTTCCCATCAGTGCATTGCAGAGGACGGAAATTATGGATCACAGACAAGATCCCTTGTTTGATGAAGAATCAACAAAAATGGTTGATGTAATCACAAGAGCATTCCTGAGATCCAAAGCTGTTCAGGTTGCCATGTACTATTGTTTTCACCAAAGGATTGAGTCTGCAATGATTTGTGGTCTTCAGCTTTTGTCAAGGTGCTGCCTCCATAGTGGAATTGTTCCATCTGCCCTTTGTGGTCTGCCCAGTTCCCTTCCTTTAACTACTGTTGTAAGTGGTGGTGGTGATGGAACTATTGTTTCAGAGATTTTCTCAGTTTTGTCAATATGCAGTTCCTCTCTCAACAAAGATGCACCCATGGTAGAACCAAGTAACACTAAATGCAAATTAGCAAATCCTTCTGCTCTGATTCGTCATTCATGTACCATTCTCACAATAATTGCACAATGTTTTAAGTCAGCTGGTAGAAATTCTGCAATTTTTATGCTCACCACCTCACCAAAGAAGCAGCTTGCCCGACTCTCAGTTCTTGCTCATCACGTTTCTTATGATGATAAAACAAAAGCCTCTTTCCAACTTCAAAGTGCATCAGCCATGTTGGCTCTTGCATCCATTCTTTCCCTCGAATCTGGAACTTCTGTTGAGTCTTCAATATCCGAAATTGCTATGCCCTTAATTCCTCGAACTTCTACACTAAGTGACTATCTTAAATTTTCATCAGGAAATGAAAATGAACTGGACCCTGGAAATTTTAATGGGAAGCTCCCATATTGGCTAGCGGTAAAAGATGGGTGTGTTGGTCTTTTAGATTCCAAACTCAAGTGGGGAGGACCATTAGCTGTTCAGCAGTTGTGTGCAAGTGGTATACCTCTTCTTCTTATCGGCTTATTAAGCAACGGGTTTTTAAATGCTTCTCAAGAAAAAGAGGGCCTAAATGATAAAGTTGGATTGTCTCCTATCGGTGTTGTGTGCACAGTTTCATCATTATGTCATTGTCTCTCTGGCGGCGCTTTGATTTTTCGTCAGATTTTGATTAGGAATGAACATGTTAAGCTCATATCCAACTTAATATGTGATGTTCATCTTAAGTTGATAAAATGCTGGACCGGACCTGGTGGAGGGAGAGCAGGAGTCCGAGATCTAATAAATGCAGTCATAGATCTCTTAGCATTTCCTTTTGTTGCTCTTCAAAATGCACCAGGCTTGCCATCGGCCACTGCTTCTGTTAGCAGTGGGTTTCTTCTTAATGTTGGTTCCCCTGGTCAGAGAGTATGCATGGAAGACAAGGATACAGTTAAGGCAATAGAAGAAGACATGGGAAAATACATTAAGATCCTTATGGAGGTTGGTGTGCCTAGTATTATCCTTCGATGCCTAGATCATATGGAATTGAATGATATGGGTAGGCCTGTGGCCTTTCTTGCTAAAATGGTGTGCCAACGACCTTTAGCAGTCCAACTTGTGAGTAAAGGTCTTTTGGATCCAAATAGGATGAAAAGGTTGTTTGACCTTTCGGGACCAAAAGAGGTTATGCTGGATGCTCTTATGATCATTTCTGATCTTGCTCGTATGGACAAGG 3352 0.4081 MGSVENYHVIELVGEGSFGKVYKGRRKHTGQTVAMKFIMKHGKTEKDIHNLRQEIEILRKLKHENIIQMLDSFESPQEFCVVTEFAQGELFEILEDDKCLPEEQVQAIAKQLVRALHYLHSNRIIHRDMKPQNILIGSESIVKLCDFGFARAMSTNTVVLRSIKGTPLYMAPELVREQPYNHTVDLWSLGVILYELFVGQPPFYTNSVYALIRHIVKDPVKYPDSMTPSFKSFLKGLLNKAPESRLTWPALLEHPFVKETNNEIEDRELHEKSGSPKDSDTTQRVDRKTIQTSTGKNNHKTGLTEHISSPLQNEAQLNGPNMNKTNSKVLDESPGFSNQNDVAESGCQRLDRLESNSRTVKGAKVIGQDNEAYGFVLQPLKRWSKGSQNICSDQDLPASNQSLRILSNLVDAGVFNSTGQIDELISELLLFTRSVVAMKSAEVFDLLTKGFSITKVLLDIGGKFCSNSYANHWVELVEIYSQVVTSTNDASGRVLYESSACITVMLSKVAQVLKSSQISSSETLNETANRIIEHAKTSGLIDHLCSCLATSGSGLIAGSSNMLRAASEACRAAWSLINALDVLFKRNSAILFPISALQRTEIMDHRQDPLFDEESTKMVDVITRAFLRSKAVQVAMYYCFHQRIESAMICGLQLLSRCCLHSGIVPSALCGLPSSLPLTTVVSGGGDGTIVSEIFSVLSICSSSLNKDAPMVEPSNTKCKLANPSALIRHSCTILTIIAQCFKSAGRNSAIFMLTTSPKKQLARLSVLAHHVSYDDKTKASFQLQSASAMLALASILSLESGTSVESSISEIAMPLIPRTSTLSDYLKFSSGNENELDPGNFNGKLPYWLAVKDGCVGLLDSKLKWGGPLAVQQLCASGIPLLLIGLLSNGFLNASQEKEGLNDKVGLSPIGVVCTVSSLCHCLSGGALIFRQILIRNEHVKLISNLICDVHLKLIKCWTGPGGGRAGVRDLINAVIDLLAFPFVALQNAPGLPSATASVSSGFLLNVGSPGQRVCMEDKDTVKAIEEDMGKYIKILMEVGVPSIILRCLDHMELNDMGRPVAFLAKMVCQRPLAVQLVSKGLLDPNRMKRLFDLSGPKEVMLDALMIISDLARMDK 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2170 1117 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Psa6g2170 1117 PANTHER PROTEIN KINASE RELATED 1 1117 IPR045193 GO:0004674
Psa6g2170 1117 MobiDBLite consensus disorder prediction 286 304 - -
Psa6g2170 1117 MobiDBLite consensus disorder prediction 262 304 - -
Psa6g2170 1117 ProSitePatterns Protein kinases ATP-binding region signature. 13 40 IPR017441 GO:0005524
Psa6g2170 1117 Gene3D Transferase(Phosphotransferase) domain 1 2 330 - -
Psa6g2170 1117 CDD STKc_STK36 5 257 - -
Psa6g2170 1117 ProSiteProfiles Protein kinase domain profile. 7 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g2170 1117 Pfam Protein kinase domain 7 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g2170 1117 MobiDBLite consensus disorder prediction 262 285 - -
Psa6g2170 1117 Coils Coil 41 61 - -
Psa6g2170 1117 SMART serkin_6 7 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g2170 1117 SUPERFAMILY Protein kinase-like (PK-like) 4 265 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2170 Psa-Chr6 150893548 150902773 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2170 4 269 AGC Kinase Gene Family AT3G08720 37.226 7.74e-46 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_Fused Psa6g2170 Pkinase 2e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2170 K06228 - gmx:100792102 1763.81