Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2161 ATGAATGATTCAAAATCTTTTGGAAAAAAGCATGAAGAATGGTTATCTACCTCAGCGCACATTACTTGTCAGAAACTTTCATCTTCTTCTGATAAAACATTGAAAGAAAAGATTTTGAAACGGAAAAATGTGAACAAAGTCCTAGAAATTTTTAGGGACTTGTCTCACAAGCTCTATTGTGAGTATAAGTCAAGTGAAGTCAAAAATTTGAAAGCAAAAACAAAAGCTTTGATAGAAGCTGCAATGTCTATGAAAGTGAAGCATCAATGGGAAAACACTGGAAAAAGATTAGGGCATGTAGATGGAATTGAAGTTGGTGACCGCTTTCAATACAGGCCTGAACTTGTTATCATTGGTCTCCATCAACAATTCTCCGGCGGTATTGATTATTTGGGTAAAGGTGAGTATTCTTTGGCAACTAGTATTGTTGTAACTCAGAAGTATGCTAATGTTATGAAGTCTAGTGGTTGTTTGGTTTATGAAGGTCAAGGTAGTAACCCTAAGGTACGAACAACATCCGTGCCTCCTTGTGATCAGAAATTGGAAGGGGGAAGTCTTGCTTTGATGAATAGTATGAATGCTAGGCATCCTGTTAGGGTTATATTGAAGGTTTGTGGGAAATTTAATGGGATGGGAGAATGGAAGAATAATGTTTCTGATTATTCGTATGTGTATGATGGGCTGTATTCGGTTGACAGCATGACTCAAGATAGGGGACAATTTGGAAAACTTGTGTTCAAGTTTGTACTTAACAAAATTTCAGACCAATCATCCGCGAGTGTCTCCTCTCGAGATGTTGTTAAGGAAACTGAAACTTTCTCGAAGAGAAAGAAGTCTAAAGGTCATGTTCTCGACAAGGATGTTGTTCGTATCAATGATATTTCAGAGGGGAAAGAAAATTTTCCAATTCGATTGGTGACGCCAATAAATTGTGTGGAGAAACCTAAACCCTTTGGCTACCTAGTCAAAATGATTTATCCAAAGATGAATCATTCAACACTACTAGGTGGTGAATGTAATTGTGAAAATGCATGTGTTGATTCACTTAAATGTGTTTGCATAGCTAAGAATAATGGTGGGACAATAGCATATGGTGGTAACAAAAGACTGGTTTCTCCTATGAAATCGTCCTTTATATACGAGTGTGGACCTTCTTGCGCGTGTTCATCGTCTTGCATCAACCGAGTGAGTCAATGCGGTATTCAGTTCCAACTAGAAATCTTCAAAACAAATTCGAAGGGGTGGGGTGTTAGAACGCGATCTTTCATTCCATCCGGAAGCTTTGTGTGTGAGCTCATTGGAGAGCTTGTTCATCAAAACCATGGAAAAGCTGTATCAAATCTACATGTTGATGATTACATATTTAATATAGGTGGTGGCTTGATTGATGCAGGTAAACATGGAAACATTGGAAGGTTTATAAATCATAGTTGTTGTCCAAACCTATGTATGAAAGATGTTATGTACGATCACAACAATAAGAGTGTAGCACACAAAGTGTTGTATGCTTTAAAGGACATAGCTGCAGGTAGAGAGGTTAGTTATGATTACAACAATTGGTGCAAGGGGAATATGAAGAAGGTTTTGAGTAATATTTGCTACTGTGATTCATCGGAATGCAAGGGATATATTTACAAGTGA 1641 0.3754 MNDSKSFGKKHEEWLSTSAHITCQKLSSSSDKTLKEKILKRKNVNKVLEIFRDLSHKLYCEYKSSEVKNLKAKTKALIEAAMSMKVKHQWENTGKRLGHVDGIEVGDRFQYRPELVIIGLHQQFSGGIDYLGKGEYSLATSIVVTQKYANVMKSSGCLVYEGQGSNPKVRTTSVPPCDQKLEGGSLALMNSMNARHPVRVILKVCGKFNGMGEWKNNVSDYSYVYDGLYSVDSMTQDRGQFGKLVFKFVLNKISDQSSASVSSRDVVKETETFSKRKKSKGHVLDKDVVRINDISEGKENFPIRLVTPINCVEKPKPFGYLVKMIYPKMNHSTLLGGECNCENACVDSLKCVCIAKNNGGTIAYGGNKRLVSPMKSSFIYECGPSCACSSSCINRVSQCGIQFQLEIFKTNSKGWGVRTRSFIPSGSFVCELIGELVHQNHGKAVSNLHVDDYIFNIGGGLIDAGKHGNIGRFINHSCCPNLCMKDVMYDHNNKSVAHKVLYALKDIAAGREVSYDYNNWCKGNMKKVLSNICYCDSSECKGYIYK* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2161 546 Pfam SAD/SRA domain 97 256 IPR003105 -
Psa6g2161 546 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6 20 542 - -
Psa6g2161 546 SMART preset_2 291 387 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa6g2161 546 Pfam SET domain 414 518 IPR001214 GO:0005515
Psa6g2161 546 ProSiteProfiles Pre-SET domain profile. 337 400 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa6g2161 546 ProSiteProfiles SET domain profile. 403 518 IPR001214 GO:0005515
Psa6g2161 546 Gene3D SET domain 271 528 IPR046341 -
Psa6g2161 546 Pfam Pre-SET motif 294 395 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa6g2161 546 SUPERFAMILY PUA domain-like 80 259 IPR015947 -
Psa6g2161 546 SUPERFAMILY SET domain 284 526 IPR046341 -
Psa6g2161 546 SMART set_7 403 524 IPR001214 GO:0005515
Psa6g2161 546 Gene3D - 79 270 IPR036987 -
Psa6g2161 546 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 20 542 - -
Psa6g2161 546 SMART G9a_1 93 256 IPR003105 -
Psa6g2161 546 ProSiteProfiles YDG domain profile. 98 252 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2161 Psa-Chr6 148931298 148933649 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2161 4 542 Su(var)3-9 homologs AT1G73100 32.082 4.07e-71 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa6g2161 SAD_SRA 6.8e-36 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2161 - K11420 gmx:100807574 578.556