Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2126 ATGATGCAACCACTTTACCTTAAAGAACATGAAGGACAGTATTCATCTGTGAATTCAGCTCCATGGTGGAGTGGTAATGCCTATGGAACTCAATCTGTTTATGGAGGAGGAGATTCTTGTGGACAAATCAAACCCTTTTCACTCGAACTTTCCAACTACATAGATCAACTTTCTCCGACTAAGAACTTAGCAAGAGGAGTTGAACAGTTGTTTGATAAAGCACATACAAACCAATTTACCATCTTTCCAGATGACTGTAAGATGTCGGTTGATGCACAAAATCATCAAGCAACCTTATCATTGCAATCATCCTATGTTGCTGCTGAGCCGTACAATCGTTTCGAGCTAGGGTTTAACCAGCCTATGATCTGTGGAAAGTATCCTTATATGGATCAATTTTACGGGCTCTTCTCGACTTATGGACCTCAAATTTCGGGACGTATAATGCTTCCGCTTAGTATGACATCTGACGACGGACCAACTTACGTGAATGCGAAGCAGTACAATGGAATCATCAGACGTCGTCAATCTCGTGCCAAGGCTGTGCTTCAGAATAAACTGATCAAACGTAGTAAGCCATATATGCATGAATCGCGCCATCTGCACGCAATGCGGAGGCCAAGAGGATGCGGTGGTCGCTTCTTGAACACAAAGATTTCTCCAAATGGGAACGGGAAAAGCGAGGGTGGGGGCGGAGCACACAACAAAAACGGTGGCCTAAAACTGCAGTCAAGTGCTTCACAGAGTTCTGAAGTCCTGCAATCTGAGGTTGGAACTTTAAATTCGTCAAAGGAAACAAACGGAGGCAGTCCAAATGTCTCGGGGTCAGAAGTGACTAGCATGTATTCACAGGGAGGTCTCGATAGCTTTACTGTCAATCATATCGCTTCTTCAGTCCACTCTTTAGGAGACATGATCGATACTGAACACGGTATCGTCATGCCAACAAAATGGTTTGCAACAGCTGTCGTCGCTAGCAGACAGCTGCTGCAACCTTAA 999 0.4444 MMQPLYLKEHEGQYSSVNSAPWWSGNAYGTQSVYGGGDSCGQIKPFSLELSNYIDQLSPTKNLARGVEQLFDKAHTNQFTIFPDDCKMSVDAQNHQATLSLQSSYVAAEPYNRFELGFNQPMICGKYPYMDQFYGLFSTYGPQISGRIMLPLSMTSDDGPTYVNAKQYNGIIRRRQSRAKAVLQNKLIKRSKPYMHESRHLHAMRRPRGCGGRFLNTKISPNGNGKSEGGGGAHNKNGGLKLQSSASQSSEVLQSEVGTLNSSKETNGGSPNVSGSEVTSMYSQGGLDSFTVNHIASSVHSLGDMIDTEHGIVMPTKWFATAVVASRQLLQP* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2126 332 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 330 IPR001289 GO:0003700|GO:0006355
Psa6g2126 332 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 160 214 IPR001289 GO:0003700|GO:0006355
Psa6g2126 332 ProSiteProfiles NF-YA/HAP2 family profile. 157 217 IPR001289 GO:0003700|GO:0006355
Psa6g2126 332 SMART cbf3 156 217 IPR001289 GO:0003700|GO:0006355
Psa6g2126 332 PRINTS CCAAT-binding transcription factor subunit B signature 160 182 IPR001289 GO:0003700|GO:0006355
Psa6g2126 332 PRINTS CCAAT-binding transcription factor subunit B signature 191 214 IPR001289 GO:0003700|GO:0006355
Psa6g2126 332 MobiDBLite consensus disorder prediction 243 277 - -
Psa6g2126 332 Gene3D - 157 218 - -
Psa6g2126 332 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 3 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2126 Psa-Chr6 146970834 146973532 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2126 11 324 CCAAT-HAP2 Transcription Factor Family AT3G05690 42.508 1.55e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Psa6g2126 CBFB_NFYA 9.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2126 K08064 - gmx:100808195 446.047