Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa6g2117 | ATGGAAGGTTTTCTCAAGGATTTCGATTTGAAAGACAAGGATCGTTCCATTGAAGCTCTCAGTAGATGGAGATCCGCCGTCTCCTTGGTCAAAAACCATCGCCGGAGGTTTCGCAACGTAGCCGATCTCGCTAAACGCGCTGTAGCACTGGAGAGGCAGAGGAAAATTCAGGGAAAGTTTCGGGCTGTTATCAATGTTCAACGAGCAGCACTGCATTTTACCGATGCTATTGCTTCACCTGAATTTAAGGTATTGGAAAAGACGAGAGAGGCTGGTTTTGGAATCGAACCGGATGATATTGCATCAGTTGTTCGAAGCCATGATTACAAGAACCTTACAAAAGTTGGTGAAATTCAAGGGATTACTAGTAAACTTTCAGTCTCGGTCGATGAAGGTGTTCGTCAAGACAGTATACATAGTAGGCAAGAGATTTATGGGCTCAACCGTTATACCGAGAAACCATCTAAAAGCTTTTTGATGTTTGTTTGGGATGCACTGCATGACCTAACACTCATCATTCTAATTGTTTGTGCTTTAGTTTCCATAGGCATAGGGCTTCCCACTGAAGGGTGGCCAAAGGGTGTTTATGATGGTCTTGGAATCATACTTAGTATATTTTTGGTAGTCGCTGTGACTGCTATCAGTGACTACCAGCAATCTCTACAGTTCAGAGATTTGGACAAAGAAAAGAAAAAGATCGATGTTCATGTTACCAGGGATGGTAAAAGACAGAAGATCTCAATTTACGACTTGGTAGTAGGGGATATAGTTCATTTGTCAACCGGTGATCAAGTTCCAGCTGATGGAATTTTTATACATGGATATTCATTGCTAATTGATGAATCAAGTTTGTCAGGTGAGAGCGAACCTGTAAATATAGACGGCCGAAGACCTTTCCTTCTTTCGGGAACCAAAGTGCAAGACGGTCAGGGGAAAATGGTTGTTACAACTGTTGGCATGAGGACTGAATGGGGAAAGTTGATGGAAACTTTGAGCGAGGGAGGAGAGGATGAGACTCCTTTACAGGTGAAGTTGAATGGAGTTGCTACAGTTATTGGTAAAATTGGTTTGACTTTTGCTGTGCTGACATTTTTGGTGTTGACAGTAAGATTTGTGATTGAAAAAGCAGTTCATGGAGACTTTAGCAGCTGGTCTTCAGAGGATGCACTGAAGCTACTAGACTACTTTGCTATTGCTGTAACCATTATAGTTGTTGCGATTCCTGAAGGATTGCCATTAGCTGTAACACTCAGTCTTGCTTTTGCAATGAAAAAACTGATGAACGATAGGGCACTTGTGAGACATCTTTCTGCGTGTGAGACTATGGGTTCAGCTAGTTGCATTTGCACCGATAAAACAGGAACATTGACAACCAACCATATGGTGGTTGATAAAATTTGGATATGCGAAAAGACCACAGAGATTAAAGGGGATGGGAGTACTGATAAATTGAAATCAGAGATATCTGATGAAGTTCTAAGCATCCTTTTGCAGGCTGTATTTCAGAATACTTCATCGGAAGTTGTTAAAGACAAAGAAGGAAAGCAGACAATATTGGGAACACCAACAGAATCAGCAATATTGGAATTTGGCTTGGTTTCAGGCGGTGATTTTGACGCACAACGTAGATCCTGTAAGATACTTAAGGTTGAACCTTTCAATTCTGACAGGAAGAGGATGTCTGTGCTCGTAGGTCTTCCTGATGGAAGGGTCCGAGCTTTCTGCAAAGGTGCATCAGAAATAGTGTTGAAAATGTGTGATAAAATCATTGATAATAATGGAACAACGGTCGATCTTCCTCAAGAGAAAGCAAAGATTGTGAATGACATTATAGACGGATTTGCCAATGAAGCTTTGAGAACTCTTTGTTTGGCTGTCAAAGATATAGATGAAACACAAGGAGAAAACAACATCCCTGAAACTGGATATACTCTGATAGCCATTGTGGGAATCAAAGATCCTGTGCGCCCTGGAGTTAAGGAAGCTGTTCAAAAATGTTTAGCAGCTGGAATATCTGTCCGCATGGTCACTGGTGATAACATAAATACAGCTAAGGCTATAGCTAGAGAATGTGGTATACTTACTGAGGGTGGTATAGCCATAGAAGGACCAGAATTTCGCAATTTGTCTCCGGAACAAATGAAGGATATCATACCAAGAATTCAGGTAATGGCACGATCCTTACCTCTTGACAAGCATACCTTGGTAACCCGTTTGAGGAATATGTTTGGGGAGGTTGTAGCTGTTACTGGTGATGGAACAAACGATGCTCCTGCACTGCACGAGTCGGACATTGGGCTAGCCATGGGCATTGCTGGAACTGAGGTTGCCAAAGAAAATGCCGATGTGATTATAATGGATGACAACTTCACTACCATTGTCAAAGTTGCCAAATGGGGACGGGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACTGTCAATGTTGTTGCTCTAATTACTAACTTCGTTTCTGCATGCATCACTGGAGCTGCTCCATTAACGGCTGTTCAGTTGCTTTGGGTTAACTTGATTATGGACACCCTTGGTGCATTGGCCTTGGCTACGGAACCTCCTAATGACGGACTTATGGAACGACAGCCAGTTGGAAGGAAAGCAAGTTTTATTACCAAACCAATGTGGAGGAATATCTTTGGTCAGAGTTTCTATCAACTAATTGTCCTTGGAGTTCTAAATTTTGAGGGGAAGAGGCTATTGGGACTAAGTGGCCCAGATTCAACTGCAGTACTCAACACTTTGATATTCAACTCCTTTGTACTTTGCCAGGTGTTCAATGAGATAAACAGCAGAGAAATTGAAAAGATAAACATATTCAAAGGCATGTTTGACAGCTGGATATTTCTAAGTGTTATTCTCGCCACAGCGGTATTTCAAGTAATCATAGTTGAGTTCCTTGGAACATTTGCCAGCACAGTTCCTCTAACCTGGCAATTCTGGTTACTCAGTGTGTTATTGGGTGTACTTAGCATGCCTCTAGCTGTTATACTCAAATGCATACCAGTTGAAAGAGCTACAACAACAAAGCATCATGATGGTTATGAGGCACTTCCTTCTGGTCCTGACCTGGCATAA | 3102 | 0.4172 | MEGFLKDFDLKDKDRSIEALSRWRSAVSLVKNHRRRFRNVADLAKRAVALERQRKIQGKFRAVINVQRAALHFTDAIASPEFKVLEKTREAGFGIEPDDIASVVRSHDYKNLTKVGEIQGITSKLSVSVDEGVRQDSIHSRQEIYGLNRYTEKPSKSFLMFVWDALHDLTLIILIVCALVSIGIGLPTEGWPKGVYDGLGIILSIFLVVAVTAISDYQQSLQFRDLDKEKKKIDVHVTRDGKRQKISIYDLVVGDIVHLSTGDQVPADGIFIHGYSLLIDESSLSGESEPVNIDGRRPFLLSGTKVQDGQGKMVVTTVGMRTEWGKLMETLSEGGEDETPLQVKLNGVATVIGKIGLTFAVLTFLVLTVRFVIEKAVHGDFSSWSSEDALKLLDYFAIAVTIIVVAIPEGLPLAVTLSLAFAMKKLMNDRALVRHLSACETMGSASCICTDKTGTLTTNHMVVDKIWICEKTTEIKGDGSTDKLKSEISDEVLSILLQAVFQNTSSEVVKDKEGKQTILGTPTESAILEFGLVSGGDFDAQRRSCKILKVEPFNSDRKRMSVLVGLPDGRVRAFCKGASEIVLKMCDKIIDNNGTTVDLPQEKAKIVNDIIDGFANEALRTLCLAVKDIDETQGENNIPETGYTLIAIVGIKDPVRPGVKEAVQKCLAAGISVRMVTGDNINTAKAIARECGILTEGGIAIEGPEFRNLSPEQMKDIIPRIQVMARSLPLDKHTLVTRLRNMFGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFTTIVKVAKWGRAIYINIQKFVQFQLTVNVVALITNFVSACITGAAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMERQPVGRKASFITKPMWRNIFGQSFYQLIVLGVLNFEGKRLLGLSGPDSTAVLNTLIFNSFVLCQVFNEINSREIEKINIFKGMFDSWIFLSVILATAVFQVIIVEFLGTFASTVPLTWQFWLLSVLLGVLSMPLAVILKCIPVERATTTKHHDGYEALPSGPDLA* | 1034 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa6g2117 | 1033 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 6 | 46 | IPR024750 | GO:0005516 | |
| Psa6g2117 | 1033 | PRINTS | P-type cation-transporting ATPase superfamily signature | 280 | 294 | - | - | |
| Psa6g2117 | 1033 | PRINTS | P-type cation-transporting ATPase superfamily signature | 449 | 463 | - | - | |
| Psa6g2117 | 1033 | PRINTS | P-type cation-transporting ATPase superfamily signature | 647 | 658 | - | - | |
| Psa6g2117 | 1033 | PRINTS | P-type cation-transporting ATPase superfamily signature | 669 | 679 | - | - | |
| Psa6g2117 | 1033 | PRINTS | P-type cation-transporting ATPase superfamily signature | 750 | 769 | - | - | |
| Psa6g2117 | 1033 | PRINTS | P-type cation-transporting ATPase superfamily signature | 774 | 786 | - | - | |
| Psa6g2117 | 1033 | Gene3D | - | 446 | 795 | IPR023214 | - | |
| Psa6g2117 | 1033 | Gene3D | - | 459 | 654 | IPR023299 | GO:0000166 | |
| Psa6g2117 | 1033 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 451 | 457 | IPR018303 | - | |
| Psa6g2117 | 1033 | SFLD | C1.7: P-type atpase like | 431 | 803 | - | - | |
| Psa6g2117 | 1033 | Pfam | Cation transporting ATPase, C-terminus | 835 | 1008 | IPR006068 | - | |
| Psa6g2117 | 1033 | PANTHER | CATION TRANSPORTING ATPASE | 7 | 1018 | - | - | |
| Psa6g2117 | 1033 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 7 | 1018 | - | - | |
| Psa6g2117 | 1033 | CDD | P-type_ATPase_Ca_PMCA-like | 141 | 883 | - | - | |
| Psa6g2117 | 1033 | SFLD | p-type atpase | 431 | 803 | IPR044492 | - | |
| Psa6g2117 | 1033 | Pfam | Cation transporter/ATPase, N-terminus | 117 | 181 | IPR004014 | - | |
| Psa6g2117 | 1033 | Gene3D | - | 15 | 76 | - | - | |
| Psa6g2117 | 1033 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 546 | 695 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Psa6g2117 | 1033 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 388 | 471 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Psa6g2117 | 1033 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 715 | 838 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Psa6g2117 | 1033 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 201 | 371 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Psa6g2117 | 1033 | SMART | Cation_ATPase_N_a_2 | 117 | 186 | IPR004014 | - | |
| Psa6g2117 | 1033 | SUPERFAMILY | HAD-like | 448 | 855 | IPR036412 | - | |
| Psa6g2117 | 1033 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 117 | 1011 | IPR023298 | - | |
| Psa6g2117 | 1033 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 455 | 659 | IPR023299 | GO:0000166 | |
| Psa6g2117 | 1033 | Gene3D | - | 132 | 332 | - | - | |
| Psa6g2117 | 1033 | PRINTS | H+-transporting ATPase (proton pump) signature | 607 | 625 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Psa6g2117 | 1033 | PRINTS | H+-transporting ATPase (proton pump) signature | 750 | 766 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Psa6g2117 | 1033 | PRINTS | H+-transporting ATPase (proton pump) signature | 782 | 807 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Psa6g2117 | 1033 | Pfam | E1-E2 ATPase | 233 | 427 | - | - | |
| Psa6g2117 | 1033 | SUPERFAMILY | Calcium ATPase, transduction domain A | 235 | 330 | IPR008250 | - | |
| Psa6g2117 | 1033 | Gene3D | - | 164 | 1008 | - | - | |
| Psa6g2117 | 1033 | Pfam | Cation transport ATPase (P-type) | 505 | 589 | - | - | |
| Psa6g2117 | 1033 | TIGRFAM | ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type | 107 | 1012 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa6g2117 | Psa-Chr6 | 146197497 | 146206355 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa6g2117 | 59 | 1030 | Primary Pumps ATPases | AT3G57330 | 73.663 | 0.0 | 1497 |