Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2102 ATGGATTTTGACGGTGGTAACAAGCGCGTTTATAATCGTCTCGGTGGGTCCACCGGCGGTGACACAAAGAATCAGAAAGTGTGTTATAAATGGCAAGCGGGGAAGTGCAATCGTTATCCATGTCCGTTTCTGCATAGTGAGCTGCCTACTTCTAATGGGAATGGTGCTCCCTCGAAGCGGCCTTATGCCGAAAATTCTGGTTTCTCGGGTAACCGGCGTGGTGGTGGATCGAGTTTTAATACGTGGGGGCCTGGGCGTGGCCGCGGTGGTGGCCGCGGTAGTGTAGGAGGAGGTGGGAGGGGAGTTGTTGTGAACGTTGAGAGAGTTTGCACTTATTGGATTCAAGGAACTTGTGGTTTTGGAGACCGGTGTAAGTTCCTTCACTCTTGGAGTGTAGGGGATGGCTTTTCTTTATTGACTCAGCTTGAAGGACATAAAAAGGTTGTGAGTGGAATTGCTATGCCCTCTGGTTCGGATAAGCTTTATACTGGAAGTACTGATGAGACTGTAAGGGTTTGGGACTGCCAGTCTGGACAGTGTATAGCTGTGATCAATCTTGGTGGTGAAGTTGGTTGTATGATGAGTGAAGGTCCCTGGCTTTTTGTTGGCATACCCAATTTTGTTAAGGCTTGGAACACACAAAATTCAATGGAACTAAGTCTAGATGGCCCTGTCGGTCAAGTTTATGCACTTGTTGTGATTAATGATATGCTCTTTGCTGGTACGCAGGATGGAGCTATATTGGTATGGAAGTTTAATGTAGCTGCCAACTGTTTCGAGCCAGCTGCATCTCTTAAAGGTCATTCCCGTGGTGTTGTTTCATTAGTTGTTGGAGCTAATAGACTTTATTCTGGTTCAATGGACAATACAATTAGAGTCTGGAACCTTGAAACCTTGCAGTGTTTACAGACACTAACAGGGCACACATCTGTTGTGATGTCTGTCCTTTGCTGGGATCAGTTCCTTATATCTTGTTCATTAGACAAAACAGTGAAGGTCTGGTTTGCTACAGAAAGTGGAAATTTGGAAGTGACATATACTCACACCGAAGAACATGGTATAGTTACTCTCTGTGGGATGCATGATTCACAAGGAAAACCCATATTGCTGTGCTCTTGCAATGATAACACTGTCCGCCTCTATGATCTGCCATCATTTGCAGAGAGAGGCAAGATATACAACAAACAAGAGGTGCGAGCAATTCAAACTGGTCCTGGTAGCATATTCTTCACCGGCGATGGAACCGGCCTAGTGAGAGTGTGGAATTGGATAGTGGAACCGGCCACAGCCACGGCCAGTAACATCCAATAA 1311 0.46 MDFDGGNKRVYNRLGGSTGGDTKNQKVCYKWQAGKCNRYPCPFLHSELPTSNGNGAPSKRPYAENSGFSGNRRGGGSSFNTWGPGRGRGGGRGSVGGGGRGVVVNVERVCTYWIQGTCGFGDRCKFLHSWSVGDGFSLLTQLEGHKKVVSGIAMPSGSDKLYTGSTDETVRVWDCQSGQCIAVINLGGEVGCMMSEGPWLFVGIPNFVKAWNTQNSMELSLDGPVGQVYALVVINDMLFAGTQDGAILVWKFNVAANCFEPAASLKGHSRGVVSLVVGANRLYSGSMDNTIRVWNLETLQCLQTLTGHTSVVMSVLCWDQFLISCSLDKTVKVWFATESGNLEVTYTHTEEHGIVTLCGMHDSQGKPILLCSCNDNTVRLYDLPSFAERGKIYNKQEVRAIQTGPGSIFFTGDGTGLVRVWNWIVEPATATASNIQ* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2102 436 MobiDBLite consensus disorder prediction 65 94 - -
Psa6g2102 436 PRINTS G protein beta WD-40 repeat signature 161 175 IPR020472 -
Psa6g2102 436 PRINTS G protein beta WD-40 repeat signature 282 296 IPR020472 -
Psa6g2102 436 PRINTS G protein beta WD-40 repeat signature 322 336 IPR020472 -
Psa6g2102 436 SMART WD40_4 385 422 IPR001680 GO:0005515
Psa6g2102 436 SMART WD40_4 135 174 IPR001680 GO:0005515
Psa6g2102 436 SMART WD40_4 298 335 IPR001680 GO:0005515
Psa6g2102 436 SMART WD40_4 214 251 IPR001680 GO:0005515
Psa6g2102 436 SMART WD40_4 258 295 IPR001680 GO:0005515
Psa6g2102 436 SMART WD40_4 339 382 IPR001680 GO:0005515
Psa6g2102 436 Gene3D - 220 434 IPR015943 GO:0005515
Psa6g2102 436 SMART c3hfinal6 23 47 IPR000571 GO:0046872
Psa6g2102 436 SMART c3hfinal6 105 130 IPR000571 GO:0046872
Psa6g2102 436 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Psa6g2102 436 Pfam CCCH-type zinc finger 108 128 IPR041367 -
Psa6g2102 436 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 304 IPR001680 GO:0005515
Psa6g2102 436 Pfam WD domain, G-beta repeat 261 295 IPR001680 GO:0005515
Psa6g2102 436 Pfam WD domain, G-beta repeat 300 334 IPR001680 GO:0005515
Psa6g2102 436 Pfam WD domain, G-beta repeat 138 174 IPR001680 GO:0005515
Psa6g2102 436 SUPERFAMILY WD40 repeat-like 129 423 IPR036322 GO:0005515
Psa6g2102 436 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 430 - -
Psa6g2102 436 SUPERFAMILY CCCH zinc finger 107 129 IPR036855 GO:0046872
Psa6g2102 436 PANTHER - 1 430 IPR044715 -
Psa6g2102 436 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 174 - -
Psa6g2102 436 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 265 298 - -
Psa6g2102 436 ProSiteProfiles Zinc finger C3H1-type profile. 22 48 IPR000571 GO:0046872
Psa6g2102 436 Gene3D - 118 219 IPR015943 GO:0005515
Psa6g2102 436 ProSiteProfiles Zinc finger C3H1-type profile. 109 131 IPR000571 GO:0046872
Psa6g2102 436 ProSitePatterns Trp-Asp (WD) repeats signature. 282 296 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2102 Psa-Chr6 144544206 144550207 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2102 237 422 Miscellaneous Gene Families AT5G08390 26.768 6.60e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa6g2102 WD40 0.00054 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2102 - - mtr:MTR_6g465150 803.897