Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2099 ATGCAACAAACTGGTAGTGGAATACCAGCCCTAAGAAGCACGGAAGCTAAATTTCATGTTCTCATCACAAGCTATCAGCTATTAGTAGCCGATGAGAAGTATTTTCGTCGAGTGAAATGGCAGTACATGGTTTTAGATGAAGCCCAGGCAATCAAAAGTGCAAACAGTATAAGATGGAAGACACTTCTCAGCTTTAACTGTCGGAATCGTCTACTTCTGACTGGCACACCTATTCAGAATAATATGGCAGAGTTGTGGGCTCTTCTGCACTTCATTATGCCAACTTTATTTGATAGCCATGAGCAGTTTAATGAGTGGTTCTCAAAAGGAATTGAGAATCATGCAGAGCACGGGGGTACTTTAAATGAGCACCAGCTTAATAGACTGCATTCAATTCTAAAACCTTTCATGCTACGGCGTGTCAAAAAAGATGTAGTTTCTGAGTTGACACAAAAAACTGAGGTTATGGTGCATTGCAAATTGAGCTCTCGACAGCAGGCTTTCTATCAAGCAATTAAGAACAAGATATCTCTTGCTGAACTGTTTGATAGCAATCGCGGGCAGCTTAACGAGAAGAAGATTCTGAATTTGATGAATATTGTTATTCAACTGAGGAAGGTTTGCAACCATCCAGAGTTGTTTGAAAGGAGTGAGGGAAGCACATACTTTTACTTTGGTGAGATTCCATATTCTCTTCCACCTCCTCCATTTGGTGAGTTAGAGGATGTATACTATGCTGGAGGTCTCAACCCCATAACATTTCGGATACCAAAGCTTGTGTATCAGGAGATTATGCAAAGCTCCGAGACTCTCAGTTCAGCTGTTGGCCGTGGTGTCTGCAGAGAAACATTTCAGAGACATTTTAATATTTTTAAACCAGAAAATATCCATCGATCTATTTTTTCTGAAAAAACAAATGCTGAAAGTGGAAACTTTGGTTTTACCCATTTGATGGATTTGTCTCCGCAAGAGGTGGCATTTTTGGCCACTGGTTCTTTCATGGAGCGACTATTATTTTCTATGATAAGATGGGAACATGAAGTTGGAGACTTTCTTACAGAATATATTGTAGATGATCCTGAATGTAATTTCCTTGGAAAAGGTAAGGTGAGAGCTGTTATAAGAATGTTATTGATGCCGCCCAGATCTGAGACCAGGTTTCTTAAAAATAAAATTGCAACTGGGCCCTCCCATGCTCCTTTCGAGGGATTGGTAGTCTCACATCAGGATAGGCTTTTATCTAATGCAAGGCTTCTTCACTCAGCATACACATATATCCCACCAACAAGAGCTCCACCTATTGGTGCTCATTGCTCAGATAGAAATTTCTCCTATAAAAAGATTGAAGAATTACATGATCCTTGGCTTAAGAGGTTTTTTGTTGGATTTGCACGTACATCTGAATGTAATGGGCCTAGGAAGCCCAATCACCATCATCCTCATTATTTAATTCAAGAGATCGATTCTGAATTACCTGTTTCTCAGCCTGCACTGCAGTTAACTCACAGTATTTTTGGCTCCTCACCCCCTATGCGGAATTTTGACCCAGCAAAGTTGCTCACTGACTCTGGGAAACTTCAAACACTTGATATATTACTGAAACGCTTACGGGCAGGAAATCATCGCATTCTCTTGTTTGCCCAGATGACTAAGATGCTGAATATTTTGGAGGACTATATGAACTACAGAAAATATAAGTATTTTAGACTTGATGGATCATCTACAATTCAGGATCGCAGGGACATGGTCAAAGACTTCCAACAAAGGAGTGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCCGCTGATACAGTCATATTTTACGAGAGTGATTGGAATCCAACATTGGATCTTCAGGCAATGGATAGAGCTCACCGTTTGGGTCAGACAAGAGATGTTACGGTTTATCGACTTATATGTAAAGAGACAGTTGAGGAAAAGATTCTTCTTAGAGCAAGTCAAAAAAGTACTGTACAGAATCTTGTCATGACTGGTGGTTCTGTTGGTGGTGATCTTTTAGCTCCTGAGGATGTTGTATCTTTACTTCTTGATGATGTCCAATTGCAACAAAAGTTTAAGGAAATCCCTCTCCAGGTGAAAGATAAGCAAAAGAGAGAGCAATCTATGAAGGGTATTCGGGTTAGCGAAGATGGTGATGCATCTCTCGAAGATTTCACAAACTCTGTAGCTCAGAGTGCTGCAGATAATGATGCTTTCGTGGAGCCGGAGGGGTTAAAGTCCAATAATAAAAAGAGAAAAGCAACTTCAAACAAGCAAACTTCAAGATCAAGGAATTGTAAGAAGACAAGTGAACATGGCAGTATGCCTATAGATGAACTGGATGGTGCTCATCTAAATAATGATCCAGCGTGCCAGAAACCAAAGAGACCAAAGCGGGCAAAGAATGTAAATGAAAAATTTGAAGAAGTTTTAACTGGAACAGCTACCATATTCCCAGAGCAGACCCATTTTCCTCCTTCACATGATTTCAGTTTTGGAGGTTCTAAAGCAGAGGCAGTTCAAGACACATGA 2559 0.4025 MQQTGSGIPALRSTEAKFHVLITSYQLLVADEKYFRRVKWQYMVLDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTQKTEVMVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKKILNLMNIVIQLRKVCNHPELFERSEGSTYFYFGEIPYSLPPPPFGELEDVYYAGGLNPITFRIPKLVYQEIMQSSETLSSAVGRGVCRETFQRHFNIFKPENIHRSIFSEKTNAESGNFGFTHLMDLSPQEVAFLATGSFMERLLFSMIRWEHEVGDFLTEYIVDDPECNFLGKGKVRAVIRMLLMPPRSETRFLKNKIATGPSHAPFEGLVVSHQDRLLSNARLLHSAYTYIPPTRAPPIGAHCSDRNFSYKKIEELHDPWLKRFFVGFARTSECNGPRKPNHHHPHYLIQEIDSELPVSQPALQLTHSIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAGNHRILLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVKDFQQRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTRDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKFKEIPLQVKDKQKREQSMKGIRVSEDGDASLEDFTNSVAQSAADNDAFVEPEGLKSNNKKRKATSNKQTSRSRNCKKTSEHGSMPIDELDGAHLNNDPACQKPKRPKRAKNVNEKFEEVLTGTATIFPEQTHFPPSHDFSFGGSKAEAVQDT* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2099 852 Pfam Helicase conserved C-terminal domain 528 637 IPR001650 -
Psa6g2099 852 SMART helicmild6 554 637 IPR001650 -
Psa6g2099 852 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 708 IPR027417 -
Psa6g2099 852 Gene3D - 150 219 IPR027417 -
Psa6g2099 852 MobiDBLite consensus disorder prediction 773 787 - -
Psa6g2099 852 Pfam SNF2-related domain 14 214 IPR000330 GO:0005524|GO:0140658
Psa6g2099 852 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 140 IPR027417 -
Psa6g2099 852 Gene3D - 14 149 IPR038718 -
Psa6g2099 852 PANTHER CHROMATIN-REMODELING ATPASE INO80 12 814 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Psa6g2099 852 PANTHER HELICASE SRCAP-RELATED 12 814 - -
Psa6g2099 852 MobiDBLite consensus disorder prediction 742 812 - -
Psa6g2099 852 CDD SF2_C_SNF 516 648 - -
Psa6g2099 852 MobiDBLite consensus disorder prediction 709 729 - -
Psa6g2099 852 Gene3D - 484 748 IPR027417 -
Psa6g2099 852 MobiDBLite consensus disorder prediction 832 852 - -
Psa6g2099 852 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 528 712 IPR001650 -
Psa6g2099 852 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 95 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2099 Psa-Chr6 144518571 144533471 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2099 488 664 RAD5 or RAD16-like Gene Family AT1G61140 32.796 4.93e-26 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa6g2099 SNF2_N 3.8e-45 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2099 K11665 - gmx:100780615 1397.88