Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2084 ATGAAGTTAAATGTCGGTGTTGATGACCAAAGGACTAATAGTAAGGGGAAATCAAAAACTTCTGGATTTGGTCTGGAGGAGTGTTTAACTGGTGTCATATTTGAAGTGATAAGAGAACTTGGCAAAGGAGACGGTGTATCGACATTTGAATTTATTGGTAGCGGTGTTGTCGCAGCTTTGCTGAATTATTTATCTTGTGGGTATTTTTCTAAAGACAAACCCTCAGAAACCCACCTGCCTAAGTTTCGCAAACAAGCACTTGCAAGATTTAAGTTATTTATTACCGTTGTAGCTGCTAAGATTTTCCGGATAATTGATCACAAGCTTGGAATTGACAGAAACAGTGAGTCAGGATTGGAATTGGAGACAGTTAGTGGACTTGTGGAGCTGAAAAATGTCGACTTTTCTTATCCACCTAGGCCTGAGGTTGAAATCCTCAATGACTTCTCCTTGAATGTCCCTGCCGTGAAAAACCATAGCTTTACTATTATAAAGGCCACAGGCAGTCAACCATTACCACATGCTTCCTCTATTGTACGTTTAATTACGAAGTACTTCAAGACATGTGAGCTGCCAGAAATAAGGATTAAGGTATATTCAGTTGCAAAGATTCTGCTCATATCCATGGGTGTTGGAATGGCTTTATGCCTGTCAAAGGAAGTTGTCGATAATGCGATTGCTGCAAGTCCTTACGAAACCCATAGTGACGATGACGAAGTTGCCGTCACCGTCCATGCCACCAATAATTACTTTGTGACTGCATCACTTGACGGCACATGTTGCTTTTATGAACTGTCTTTAGGCACTTGTCTGACTCAGGTTTCAGACTCTTCTCAAGGCTACACATCTGCAGCTTTTCATCCTGATGGTCGTATTCTTGGAACAGGCACTACAGATTCTCTTGTTAAGATCTGGGAGGTAAAAGGTCAGGCAAATGTTGCCAAGTTTGATGGACATATGGGGGATGTAACTGCAATATCATTTTCTGAGAATGGATACTACCTTGCAGTTGCAGGCTCTGATATTTGTCGCTATTTCAGTGTCGTTGCTTGGTGTGGAAAGGTGAATGGCATAGCTTATGCTTCTGAAGCTTGCATCAGTGATCCAAGCTCAATTCTAAGTCCATCATTTTGGATTCATGTGCATATTGTGATCCCAGAGAGGCCAACTGAATGTGCAGTATTCAATGTCATATCAGATTCTCCTCGTGATCCCATCCAGGAAATCGTAACAGAACTACGGAACCAAGCTCAAGGATCGTCTTCTAGGAATTCATCTGAACACAATGCTCGTGGAGAAAAGCAGATGTTGCTTGAAGTTGTTGATGCTGCTGATGGGACGGCAAGCGCTTCATGCGTGAAGGAACATGTTGTGAAAACCACACCGGATGCATCTCAATCTAGCCAAGTTGCGACTCCTAGAGATATTGAGGATTTTGGCAGGTCTTTAAGACCAAACACTTTCTTGCAACATAATTTCTCTACACTAAATCAATTTCAGTCTAAGAAAAATATGGATATCAATCCTATTGATCAAGATGTCAACAAATTCAAAGTATCAGATGATGTCGGGGATAGACAGTTTGATTCTAATCATGGACAACGGTCATACGGATACACCTACACAGTTGAAGATGTTATGGTAACGGCAATACAAAATCTGGAGTTGCCATTCATCTCACTCGATGAAGACTTTGGTGCTCGAAAAGATAACAAGCTGCAACAATAG 1728 0.4138 MKLNVGVDDQRTNSKGKSKTSGFGLEECLTGVIFEVIRELGKGDGVSTFEFIGSGVVAALLNYLSCGYFSKDKPSETHLPKFRKQALARFKLFITVVAAKIFRIIDHKLGIDRNSESGLELETVSGLVELKNVDFSYPPRPEVEILNDFSLNVPAVKNHSFTIIKATGSQPLPHASSIVRLITKYFKTCELPEIRIKVYSVAKILLISMGVGMALCLSKEVVDNAIAASPYETHSDDDEVAVTVHATNNYFVTASLDGTCCFYELSLGTCLTQVSDSSQGYTSAAFHPDGRILGTGTTDSLVKIWEVKGQANVAKFDGHMGDVTAISFSENGYYLAVAGSDICRYFSVVAWCGKVNGIAYASEACISDPSSILSPSFWIHVHIVIPERPTECAVFNVISDSPRDPIQEIVTELRNQAQGSSSRNSSEHNARGEKQMLLEVVDAADGTASASCVKEHVVKTTPDASQSSQVATPRDIEDFGRSLRPNTFLQHNFSTLNQFQSKKNMDINPIDQDVNKFKVSDDVGDRQFDSNHGQRSYGYTYTVEDVMVTAIQNLELPFISLDEDFGARKDNKLQQ* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2084 575 SMART WD40_4 309 347 IPR001680 GO:0005515
Psa6g2084 575 SMART WD40_4 267 306 IPR001680 GO:0005515
Psa6g2084 575 SMART WD40_4 227 264 IPR001680 GO:0005515
Psa6g2084 575 SUPERFAMILY WD40 repeat-like 240 351 IPR036322 GO:0005515
Psa6g2084 575 ProSiteProfiles Trp-Asp (WD) repeats profile. 274 315 IPR001680 GO:0005515
Psa6g2084 575 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 341 IPR001680 GO:0005515
Psa6g2084 575 Gene3D - 223 352 IPR015943 GO:0005515
Psa6g2084 575 PANTHER PRE-MRNA-PROCESSING FACTOR 19 241 341 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Psa6g2084 575 Pfam WD domain, G-beta repeat 312 341 IPR001680 GO:0005515
Psa6g2084 575 Gene3D ABC transporter type 1, transmembrane domain 97 117 IPR036640 GO:0005524|GO:0016021
Psa6g2084 575 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 274 308 - -
Psa6g2084 575 Coils Coil 573 575 - -
Psa6g2084 575 Gene3D - 118 156 IPR027417 -
Psa6g2084 575 ProSitePatterns Trp-Asp (WD) repeats signature. 293 307 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2084 Psa-Chr6 142757993 142761870 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2084 241 348 U-box Gene Family AT2G33340 70.909 1.17e-44 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2084 K10599 - mtr:MTR_4g109420 179.489