Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2079 ATGGTTACAAATACACAACGAACAAATCTGCAAGCGCAAATCAAATTTCTCTGCGTCCAAATTCTGCAACGCGATTTCAGAACCAGGTGTAACGAGATCAACATGAGGGGAAGAAGCTACAGCTACAGTTACAGTCCGTCACCTCCAAGGTATGGTCGAAGAGAACGCAGTCCTAGTCCTAGGGGCCGCCACGGAGGCAGTTACAGAGGCCATGATAGAGACTTGCCAACAAGTCTTCTGGTCCGGAATCTGCACAAAGATTGCAGGCCAAAAGATCTGCACGATCCATTTGGCCAGTTTGGTCCTGTCAAGGATGTATATCTGCCTCGTGATTATTACACTGGGGAGCCAAGGGGTTTCGGGTTTGTTCAATTTGTGGACCCAGCTGATGCTGCAGATGCAAAATATCACATGGATGGTCAAATTCTTCTTGGTCGTGAGTTAACTGTGGTGTTTGCTGAAGAAAACAGAAAGAAACCTCAAGAAATGAGAGCAAGAGAACGGGGAAGATCATATGATTATAGGAGATCCCCACGTCGCTATTCACCATGCTATGCACAAACATATTCTCCTAGTCCAGACTATTCCCCTTCTCCAAGACAAAGGCGATACCCGAGATATTCCAGGTCAATTTCACCAAGAGACGGAAGGTATAGGAGGGAATCATACTCCAGATCTCCTTATGCATCAAGAAGCCCCAGAAGAAGTAGGAGTTACAGCAGGAGCATGAGTCGTAGTCCAGGATACTCTAGGTGA 756 0.4656 MVTNTQRTNLQAQIKFLCVQILQRDFRTRCNEINMRGRSYSYSYSPSPPRYGRRERSPSPRGRHGGSYRGHDRDLPTSLLVRNLHKDCRPKDLHDPFGQFGPVKDVYLPRDYYTGEPRGFGFVQFVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPQEMRARERGRSYDYRRSPRRYSPCYAQTYSPSPDYSPSPRQRRYPRYSRSISPRDGRYRRESYSRSPYASRSPRRSRSYSRSMSRSPGYSR* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2079 251 MobiDBLite consensus disorder prediction 225 251 - -
Psa6g2079 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 155 IPR000504 GO:0003723
Psa6g2079 251 MobiDBLite consensus disorder prediction 183 197 - -
Psa6g2079 251 MobiDBLite consensus disorder prediction 54 74 - -
Psa6g2079 251 SUPERFAMILY RNA-binding domain, RBD 77 180 IPR035979 GO:0003676
Psa6g2079 251 MobiDBLite consensus disorder prediction 157 177 - -
Psa6g2079 251 MobiDBLite consensus disorder prediction 157 251 - -
Psa6g2079 251 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL33 35 242 - -
Psa6g2079 251 MobiDBLite consensus disorder prediction 208 224 - -
Psa6g2079 251 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 35 242 - -
Psa6g2079 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 148 IPR000504 GO:0003723
Psa6g2079 251 Gene3D - 71 187 IPR012677 -
Psa6g2079 251 SMART rrm1_1 78 151 IPR000504 GO:0003723
Psa6g2079 251 MobiDBLite consensus disorder prediction 41 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2079 Psa-Chr6 142544664 142548447 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2079 58 140 Eukaryotic Initiation Factors Gene Family AT3G11400 41.860 7.06e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2079 K12900 - gmx:100816913 203.371