Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2077 ATGGCAGTTTCACATTCGATCCTACGTCGACTCCGCTTGGCTTCTTCTTCTTCTTCATCACGCTTCACTAAACCATTTCACCTCTTCAAATTCTCATTCTCCACCACCTCACCCCCGAATCCACCTCCAATTCAAGTCTCTCTCACCAACTCAACGGGTCGCGCCGTTTTCGCAACTCGCTCAATCCCTACCGGTGATCTCATCCACACCGCAGAGCCCGCCGTCTGCCATCCCTCACCCTCCGCCCTCCATCCCGTCTGCTACTCTTGTCTCACCAGACTCCCCTCCTCCCCTCCTCAACGCTCCCCCTTTTGCTCTCACCATTGCCTCCAGCGCAGTAAGGAATATTACGATGTTGAGATGAAAGCGGATTGGACGGATTTTGATAACTATTGCCGGAACCAAGGTCTAAAATATCCCTTTCTGGTAAAGCGGTTGGCTTGCATGATCATATCAGGAGTTTCCAGAAGTGACAGTCTTGACATACTTCAACCTGCCAATTTGACACCTGAGATGATTTTAGAGATGGAAAAGGGATTCACCCTGCTAAAGAATGCCTTCATAAAGACACTTGTTGCAGATGATCAAATTGCTTTTTTAACCAAACAATGGTACATTGATGTTTTGGCACGAATTCGAATCAATGCATTTCGCATTGAGTTGGCTGGTGGTGGATCATATGAAGATCTTCTTTCTTCAGCATTTGCATCTGTAGAAGCTGAAGCTGCTGTTGGAAATGCTGTCTACATACTTCCTTCCTTCTATAATCATGATTGTGATCCTAATGCACACATTATATGGATAGATAATGCAAAGGCAAAATTGAAGGCCCTCCGGGACATTGATGAAGGTGAAGAACTGAGAATCTGCTATATTGATGCCAGTATGGACCGCGATGCTCGGCGAGAATTATTGTTTCAAGGTTTTGGTTTCCAATGTAATTGTAGTAGATGCTTGCATGGTGATTAG 969 0.4551 MAVSHSILRRLRLASSSSSSRFTKPFHLFKFSFSTTSPPNPPPIQVSLTNSTGRAVFATRSIPTGDLIHTAEPAVCHPSPSALHPVCYSCLTRLPSSPPQRSPFCSHHCLQRSKEYYDVEMKADWTDFDNYCRNQGLKYPFLVKRLACMIISGVSRSDSLDILQPANLTPEMILEMEKGFTLLKNAFIKTLVADDQIAFLTKQWYIDVLARIRINAFRIELAGGGSYEDLLSSAFASVEAEAAVGNAVYILPSFYNHDCDPNAHIIWIDNAKAKLKALRDIDEGEELRICYIDASMDRDARRELLFQGFGFQCNCSRCLHGD* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2077 322 CDD SET_SMYD 231 318 - -
Psa6g2077 322 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD3 48 319 - -
Psa6g2077 322 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 48 319 - -
Psa6g2077 322 Gene3D SET domain 55 318 IPR046341 -
Psa6g2077 322 SUPERFAMILY SET domain 42 318 IPR046341 -
Psa6g2077 322 ProSiteProfiles SET domain profile. 42 292 IPR001214 GO:0005515
Psa6g2077 322 Pfam SET domain 53 291 IPR001214 GO:0005515
Psa6g2077 322 Gene3D - 86 131 - -
Psa6g2077 322 SMART set_7 42 298 IPR001214 GO:0005515
Psa6g2077 322 Gene3D - 132 216 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa6g2077 SET 6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2077 - - lja:Lj0g3v0252639.2 511.916