Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2060 ATGGAACTTGCTTTGAGCTTAGGTGACACACCAAAATTACCCTTCTCTTTTCTTGACAAACCCACCAAAGATCCACTACCACCAAGTTTCTTCTCCGAAGAAAAAACAAGTTCCTCAGATCCACCTATTCAACTTGACCTTCTTCCTTTCACTCCTGTTCTTAGATCTCATCACCCTTCTTCTCATCTTCCCATTCCATGGCTCACTCAACCATGTGGACCGGTGAGGGAGCTAGATGTAAACCGTTTTCCGGCGATGACGGAGGATCTCGACGACGGCGCGTCACTGTCATCACCCAGCAGTTCGGTGTCTCCGTTTCCTATGGATTTCAGTATGAGGAATAACAATGCTGAATATGGAGGAAGAAACAAGAGAGACAAAGAAGGTGACTCTGAAAGAGTGAGTGATGATGATGAAAACGGGTCAACTCGGAAGAAACTCAGACTCTCTAAAGATCAATCAGCTTTTCTAGAAGAAAGCTTCAAAGAACACACAACCTTAAATCCAAAGCAAAAACTTGCACTGGCAAAACAGTTGAATCTCAGTCCTCGTCAAGTTGAAGTTTGGTTTCAAAACAGAAGAGCCAGGACGAAGTTGAAGCAAACGGAAGTAGATTGTGAGTATTTGAAGAGATGTTGTGAGACATTAACAGAAGAGAATAGAAGATTACAAAAGGAACTTCAAGAGCTTAGAGCTTTGAAAACTACTCAACCATTCTACATGCAACTTCCAGCTACCACTCTCACTATGTGTCCTTCTTGTGAACGCGTGGCTACAAACCCTTGCAACAATCAAACCAACAAGACAAGAGGGTTGCCTTTCTCTAATGCCCAAGTCCAACAACAGGCCCAAGCCCAAGTTCAAGCCCATCAGATTCCTTCATGA 885 0.435 MELALSLGDTPKLPFSFLDKPTKDPLPPSFFSEEKTSSSDPPIQLDLLPFTPVLRSHHPSSHLPIPWLTQPCGPVRELDVNRFPAMTEDLDDGASLSSPSSSVSPFPMDFSMRNNNAEYGGRNKRDKEGDSERVSDDDENGSTRKKLRLSKDQSAFLEESFKEHTTLNPKQKLALAKQLNLSPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTQPFYMQLPATTLTMCPSCERVATNPCNNQTNKTRGLPFSNAQVQQQAQAQVQAHQIPS* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2060 294 Coils Coil 206 236 - -
Psa6g2060 294 MobiDBLite consensus disorder prediction 90 149 - -
Psa6g2060 294 MobiDBLite consensus disorder prediction 119 149 - -
Psa6g2060 294 Pfam Homeodomain 144 198 IPR001356 GO:0003677
Psa6g2060 294 SMART HOX_1 142 204 IPR001356 GO:0003677
Psa6g2060 294 CDD bZIP 193 232 - -
Psa6g2060 294 Gene3D - 148 198 - -
Psa6g2060 294 Pfam Homeobox associated leucine zipper 200 234 IPR003106 GO:0006355|GO:0043565
Psa6g2060 294 MobiDBLite consensus disorder prediction 93 111 - -
Psa6g2060 294 SUPERFAMILY Homeodomain-like 136 201 IPR009057 -
Psa6g2060 294 CDD homeodomain 144 201 IPR001356 GO:0003677
Psa6g2060 294 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 34 290 - -
Psa6g2060 294 SMART halz 200 243 IPR003106 GO:0006355|GO:0043565
Psa6g2060 294 PANTHER - 34 290 - -
Psa6g2060 294 ProSiteProfiles 'Homeobox' domain profile. 140 200 IPR001356 GO:0003677
Psa6g2060 294 ProSitePatterns 'Homeobox' domain signature. 175 198 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2060 Psa-Chr6 139584229 139586300 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2060 42 270 Homeobox Transcription Factor Family AT5G47370 53.306 6.27e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa6g2060 Homeodomain 3.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2060 K09338 - gmx:100776113 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g2060 6 139584229 139586300 Psa6g2060 6 139584229 139586300 ECH
Psa3g1584 3 142699793 142701438 Psa6g2060 6 139584229 139586300 PCT