Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2044 ATGGAGTCTCATGATGAAACAGGACGCCCCATACTTTGTATTAACAATTGTGGCTTCTTTGGAAGGGCTGAAACCATGAATATGTGTTCCAAATGTTACAAAGACACCTTGTTGAATAAGGAACAAGACAAGCTAGCAGCAGCATCGGTTGAAAGCTTTGTGATTGGCGGTTCAACGAAAGCGGTTGTGAATGATGGTGCTATTGATGTGGAGGTCAAGCCTGTCTGTGCTGAGATTTCTGGAGATTCATCGACTAGTGAGATTCTGGAAACCAAAGTCAAGACAGGTCCAAGCAGATGTGGAACTTGCAGGAAGCGCGTAGGATTAACCGGTTTCACCTGCAAATGTGGAAACCTATTTTGTGCAATGCACCGATATTCTGACAAACATGATTGCCCGTATGATTACCAAGCTGTTGGTCGGGACGCTATTGCTAAATCCAACCCCGTAATTAAGGCGGATAAGATCGACAAATTCTAG 480 0.4417 MESHDETGRPILCINNCGFFGRAETMNMCSKCYKDTLLNKEQDKLAAASVESFVIGGSTKAVVNDGAIDVEVKPVCAEISGDSSTSEILETKVKTGPSRCGTCRKRVGLTGFTCKCGNLFCAMHRYSDKHDCPYDYQAVGRDAIAKSNPVIKADKIDKF* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2044 159 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677|GO:0008270
Psa6g2044 159 SUPERFAMILY AN1-like Zinc finger 90 154 IPR035896 -
Psa6g2044 159 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 50 - -
Psa6g2044 159 Pfam A20-like zinc finger 11 34 IPR002653 GO:0003677|GO:0008270
Psa6g2044 159 SMART AN1_Zf_4 100 137 IPR000058 GO:0008270
Psa6g2044 159 SMART A20_3 10 34 IPR002653 GO:0003677|GO:0008270
Psa6g2044 159 Gene3D - 1 54 - -
Psa6g2044 159 ProSiteProfiles Zinc finger AN1-type profile. 94 140 IPR000058 GO:0008270
Psa6g2044 159 Gene3D - 77 155 IPR035896 -
Psa6g2044 159 Pfam AN1-like Zinc finger 100 137 IPR000058 GO:0008270
Psa6g2044 159 PANTHER AN1-TYPE ZINC FINGER PROTEIN 6 158 - -
Psa6g2044 159 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 8 6 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2044 Psa-Chr6 136767370 136769147 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2044 12 159 C2H2 Transcription Factor Family AT3G52800 39.752 3.72e-35 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2044 - - mtr:MTR_0249s0070 274.248