Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2037 ATGAACAATTTATTCACCAATTCATTCTCTCGCTTCCACAGCGAAGAAGCCACGCCGGATCGTCACCACGTCATCGAGATGACAGACGGCGGAAGTCCGGGAACCGGAGCTAGAGTAAACCTCGACAAATTCTTCGACGACGTCGAAGGCGTAAAAGACGATCTAAAAGAGCTCGAAGGAATTTCACAAAAACTAAACAAGAGTCACGAACAGAGCAAAACGGTTCACGATGCTAAGGGAGTGAAGGAGTTACGTTCTCGTATGGATGACGACGTTTCGGTGGCTTTGAAGAAAGCGAAGATGGTGAAGCTGAAATTGGAGGCTCTGGAACGATCTAATGCTGCGAACCGGAATTTGCCAGGGTGTGGACCCGGTTCGTCTTCGGACCGAACGAGAAGTTCTGTGGTCAACGGTTTGAAGAAGAAACTTAGGGATTCTATGGAGACTTTTAACCGGCTCCGTGAACTTATCTCGTCGGAATATAGAGAGACTGTTCAACGACGTTACTTCACCGTTACCGGCGAGAATCCCGATGATAAGACGCTTGATCTATTGATCTCCACTGGTGAGAGTGAGACCTTTCTTCAGAAAGCAATTCAAGAACAAGGCAGGGGGCAAATTATTGACACCATTAATGAGATTCAAGAGAGGCATGATGCTGTGAAAGAGTTGGAGAAGAATTTACTGGCATTGCACCAAGTGTTTCTCGACATGACAGTATTGGTACAATTTCAAGGTGAGCAGTTGGATGATATTGAGAGCCATGTGGCAAGGGCGAGCTCTTTTGTGCATACCGGAGCTGAGCATTTAGAGACGGCAAGGAAGCACCAGAGAAACACAAGGAAATGGACCTTTTATCTTATTATACTTATTCTGATCATTGTTTTGGTTATTGTTCTCGTCGTTGTGAAACCGTGGCAACATAATGGTGGCGGTGGGAATAGTCAGCCTGCTCCAGCACAGACAACTCCATCTCCTCCTTCTCCTCCGGCTTCTACTTAA 1002 0.4641 MNNLFTNSFSRFHSEEATPDRHHVIEMTDGGSPGTGARVNLDKFFDDVEGVKDDLKELEGISQKLNKSHEQSKTVHDAKGVKELRSRMDDDVSVALKKAKMVKLKLEALERSNAANRNLPGCGPGSSSDRTRSSVVNGLKKKLRDSMETFNRLRELISSEYRETVQRRYFTVTGENPDDKTLDLLISTGESETFLQKAIQEQGRGQIIDTINEIQERHDAVKELEKNLLALHQVFLDMTVLVQFQGEQLDDIESHVARASSFVHTGAEHLETARKHQRNTRKWTFYLIILILIIVLVIVLVVVKPWQHNGGGGNSQPAPAQTTPSPPSPPAST* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2037 333 PANTHER SYNTAXIN 9 310 IPR045242 -
Psa6g2037 333 CDD SNARE_syntaxin1-like 210 272 - -
Psa6g2037 333 Pfam SNARE domain 247 299 IPR000727 -
Psa6g2037 333 Gene3D - 197 304 - -
Psa6g2037 333 SMART SynN_4 36 162 IPR006011 GO:0016020
Psa6g2037 333 CDD SynN 41 198 IPR006011 GO:0016020
Psa6g2037 333 Pfam Syntaxin 43 246 IPR006011 GO:0016020
Psa6g2037 333 SUPERFAMILY t-snare proteins 40 266 IPR010989 GO:0016020|GO:0016192
Psa6g2037 333 Gene3D - 39 171 - -
Psa6g2037 333 ProSitePatterns Syntaxin / epimorphin family signature. 217 256 IPR006012 GO:0005484|GO:0006886|GO:0016020
Psa6g2037 333 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 9 310 - -
Psa6g2037 333 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 211 273 IPR000727 -
Psa6g2037 333 MobiDBLite consensus disorder prediction 310 333 - -
Psa6g2037 333 SMART tSNARE_6 206 273 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2037 Psa-Chr6 136182660 136185298 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2037 34 332 SNARE and Associated Proteins AT3G11820 67.638 3.58e-143 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2037 K08486 - gmx:100809258 468.774