Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2030 ATGGATCTGGGAGGCACTGGGAGTTCGTTCAAAGAAGTTCTTGAATCACACATGATTTTTTCAGATTATGAGAAAGCTAAGTTTAAATCGGAGGCCAATTGTAATAATACGTTCGTAAAATCAAGGATTTGTTCGGATGGGAAGAACGGAAATAATTCAAAGAATGGTGTTTATGACTTACTCGAGTGCCCTGTTTGCAAGAATTTGATGTATCCCCCAATTCATCAGTGCCCAAATGGCCATACCTTATGTTCAAATTGTAAAACTGCGGTGCATAACCGTTGCCCAACATGTCATCGTGATCTTGGGAATATAAGGTGTTTGGCTTTAGAGAAGGTTGCAGAATCAATGGAGCTTCCTTGCAGATATCAAAATCTAGGTTGTCATGATATATTCCCGTACCACACTAAACTAAAGCACGAACAAAATTGTCGATTTCGTCCATACAATTGCCCTTACGCCGGATCAGAGTGCTCTATAATGTGTGACATTCCAACTCTTATGGCACATCTCAAGAATGATCACAAGGTTGACGTACATGATGGATTCACCTTCAACCATCGATACGTCAAATCAAATCCACACGAAGTTGAAAATGCCACATGGATGCTAACGGTTTTCAATTGTTTTGGAAAGCATTTTTGCTTGCACTTCGAGGCGTTTCTACTCGGCACAGCTCCCGTTTATATGACGTTTTTACGATTTTTAGGAGATGAGAAAGAGGCAAAGAAATTCAGGTATAGCTTAGAGGTCGGTGGAAATAGCCGCAAACTCACATGGCAAGGAATACCAAGGAGCATCCGCGAGAGTCATAGAAAAGTCCGTGATAGTCAAGACGGACTCATCATTCAGAGAAACCTAGCTCTTTATTTTTCCGGTGGCGATAAACAACAGTTAAAGTTGAGGATCACTGGTCGTATATGGAAAGAAGAATGA 936 0.4092 MDLGGTGSSFKEVLESHMIFSDYEKAKFKSEANCNNTFVKSRICSDGKNGNNSKNGVYDLLECPVCKNLMYPPIHQCPNGHTLCSNCKTAVHNRCPTCHRDLGNIRCLALEKVAESMELPCRYQNLGCHDIFPYHTKLKHEQNCRFRPYNCPYAGSECSIMCDIPTLMAHLKNDHKVDVHDGFTFNHRYVKSNPHEVENATWMLTVFNCFGKHFCLHFEAFLLGTAPVYMTFLRFLGDEKEAKKFRYSLEVGGNSRKLTWQGIPRSIRESHRKVRDSQDGLIIQRNLALYFSGGDKQQLKLRITGRIWKEE* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2030 311 SUPERFAMILY RING/U-box 57 103 - -
Psa6g2030 311 Pfam Seven in absentia protein family 105 304 IPR018121 GO:0005737|GO:0006511|GO:0007275
Psa6g2030 311 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 8 311 - -
Psa6g2030 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 169 IPR013083 -
Psa6g2030 311 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 170 304 IPR008974 GO:0005515
Psa6g2030 311 ProSiteProfiles Zinc finger SIAH-type profile. 116 176 IPR013010 GO:0008270
Psa6g2030 311 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT1-RELATED 8 311 - -
Psa6g2030 311 SUPERFAMILY TRAF domain-like 119 307 - -
Psa6g2030 311 CDD RING-HC_SIAHs 61 98 - -
Psa6g2030 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 115 IPR013083 -
Psa6g2030 311 ProSiteProfiles Zinc finger RING-type profile. 63 99 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2030 Psa-Chr6 135933961 135935337 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2030 7 311 C3H Transcription Factor Family AT2G41980 77.377 1.61e-176 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2030 K04506 - gmx:100500061 538.88