Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2013 ATGTCTCTTGAAGAGTCTCTAAGATCTCTCTCCCTTGACTACCTGAACCTCCTGATTAACGGGCAAGCCTTCAGCGACGTGACTTTCCAAGTGGAAGGTCGTCTGGTTCACGCTCATCGCTGCATCTTAGCAGCAAGGAGTCTCTTTTTCAGGAAATTCTTTTGTGGACCCGATCCACCCTCCGGACTAGACCCAATAGGAGGAGGATCATCTCGACAATCAACAGCAAGACCCGGTGTCATCCCGGTGAACTCTGTTGGATATGAGGTGTTCCTCCTGCTGTTGCAGTTTCTGTACAGTGGACAAGTTTCTATTGTTCCTCACAAACATGAACCTAGACCTAATTGCGGTGAGAGAGGTTGCTGGCATACGCATTGTAGCTCAGCCGTCGATCTTGCCCTTGACACCCTCGCTGCTGCTAGATACTTCGGAATTGAACAGCTTGCATTGCTCACTCAGAAGCAACTAGCGAGCATGGTAGAGAAAGCCTCAATAGACGATGTGATGAAAGTACTAATAGCTTCAAGAAAGCAAGAACTGAACCAACTTTGGACAACTTGTTCCCACCTTGTTGCCAAGTCAGGTCTCCCACCCGAAATCCTAGCCAAGCATCTTCCTATCGACGTAGTGGCCAAAATCGAAGAGCTTCGTCTCAAATCATCCTTGGCGCGTCGCTCCTTAATGCCACTCCACCATCATCACCACCACGACCTAGGTGATCTAGAGGACCAGAAAATCCGCCGAATGAGGCGGGCTCTTGACTCCTCGGATGTCGAACTGGTCAAACTCATGGTCATGGGAGAAGGCCTAAACCTGGATGAAGCATTGGCATTACACTATGCAGTAGAGAATTGCAGCAGAGAAGTGGTGAAAGCCTTGCTCGAACTCAGTGCTGCTGATGTTGACTACCCAGCTGGACCGGCTGGCAAAACTCCGCTTCACGTGGCCGCCGAGATGGTGTCTCCGGAAATGGTGGCAGTTTTGCTTGATCACCATGCAGACCCCACAGTAAGAACCGTTGATGGTGTGACACCTTTAGATATACTCAGAACCCTAACTTCTGATTTTCTCTTCAAAGGTGCTGTTCCTGGATTAATCCACATTGAACCAAACAAGTTAAGACTGTGTTTGGAACTTGTTCAATCAGCAGCTCTTGTTCTCTCACGTGAAGAGAACAATGCTAACAACAACAATAATGCTTCTTCATCAGCAGCACAGGTTTACCCTCCAATGAGTGAAGATCATAGCAGCAGCAGTAGTGGAAACAACAATAATAACAACATTGGTAACCTGAATTTGGATTCAAGATTGGTGTACCTGAACCTTGGTGCTACTCAAATGGGTGGTGGTGGTGGTGATGATAGTGGACACAATAGTCAAAGGGAAACCATGAATCGTCATGGATCTCAAGCTGGTCATGGATGTGACCCAACAATGTACCATCACTCTCACGATTTCTAA 1461 0.4757 MSLEESLRSLSLDYLNLLINGQAFSDVTFQVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPIGGGSSRQSTARPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPHKHEPRPNCGERGCWHTHCSSAVDLALDTLAAARYFGIEQLALLTQKQLASMVEKASIDDVMKVLIASRKQELNQLWTTCSHLVAKSGLPPEILAKHLPIDVVAKIEELRLKSSLARRSLMPLHHHHHHDLGDLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELSAADVDYPAGPAGKTPLHVAAEMVSPEMVAVLLDHHADPTVRTVDGVTPLDILRTLTSDFLFKGAVPGLIHIEPNKLRLCLELVQSAALVLSREENNANNNNNASSSAAQVYPPMSEDHSSSSSGNNNNNNIGNLNLDSRLVYLNLGATQMGGGGGDDSGHNSQRETMNRHGSQAGHGCDPTMYHHSHDF* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2013 486 Gene3D - 241 356 IPR036770 -
Psa6g2013 486 MobiDBLite consensus disorder prediction 444 486 - -
Psa6g2013 486 MobiDBLite consensus disorder prediction 452 467 - -
Psa6g2013 486 MobiDBLite consensus disorder prediction 393 428 - -
Psa6g2013 486 Gene3D Potassium Channel Kv1.1; Chain A 3 193 IPR011333 -
Psa6g2013 486 ProSiteProfiles BTB domain profile. 25 107 IPR000210 GO:0005515
Psa6g2013 486 ProSiteProfiles Ankyrin repeat profile. 308 340 IPR002110 GO:0005515
Psa6g2013 486 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 486 IPR044284 GO:0099402
Psa6g2013 486 SUPERFAMILY Ankyrin repeat 267 351 IPR036770 -
Psa6g2013 486 Pfam Ankyrin repeats (3 copies) 256 338 IPR002110 GO:0005515
Psa6g2013 486 ProSiteProfiles Ankyrin repeat region circular profile. 308 334 - -
Psa6g2013 486 SUPERFAMILY POZ domain 9 158 IPR011333 -
Psa6g2013 486 SMART BTB_4 25 160 IPR000210 GO:0005515
Psa6g2013 486 Pfam Domain of unknown function (DUF3420) 195 250 IPR024228 -
Psa6g2013 486 Pfam BTB/POZ domain 16 147 IPR000210 GO:0005515
Psa6g2013 486 CDD BTB_POZ_NPR_plant 8 160 - -
Psa6g2013 486 SMART ANK_2a 308 337 IPR002110 GO:0005515
Psa6g2013 486 SMART ANK_2a 273 303 IPR002110 GO:0005515
Psa6g2013 486 PANTHER REGULATORY PROTEIN NPR5 1 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2013 Psa-Chr6 131013118 131016512 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Psa6g2013 BTB 1.4e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2013 K14508 - qsu:112012060 766.533