Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2009 ATGGCAGTTCCAAGTTCCGTTTTGAAGGTAGAAGAAATTCAAGGAAGAGGAAGAGGAATAGTTGCATCTCAGCCTCTCAAAGCTGGCCAAATCATCCTCACAGATTCTCCAATCCTTCTCTACCCTACTTCCCTCTTCTCTCAACACTCTTCCTCTTTTTGTGACCATTGCTTCAAATATTGTTCATCATCTTCACTTGCTTCATGCCCTTCTTGTCACCGATATCGCTTTTGCGATTCGACTTGTCTCTCAAAAGCTCTGAACTCCTCCCATTCTACCTTTGTTTGTCAATCATTATCTAAATTACAATCCAATTCACTTCTCCTTCAACAAGCAGTCGAATGTCAACTCCAAGCTCGTTTTCTTGTTGCTGCTTACAATCTTGCTGTTAACCACCCTTCCAATTTTCAGATTTTGTTGTCTCTTCAGGGTTCTTTTGATAATGATGGTGCAGCTCAGTTTCTACATCCCATTATTTCATCCCTGTTTTCGCATCCGCATAATGAATTGTTTTCTTTGCAACTCACTTCTTCACTTCTTGCTAAGGATAAGCTCAATGCTTTTGGTATAATGCATCCTTTCTCTGAAAATGATGAACATAGGTCTGTTAGAGCTTATGGTATTTACCCTTATGCATCCTTTTTCAACCATGATTGTCTTCCCAATGCTTGTAGATTTGATTATGTTGATGCGAATCCACCTTATCATGCCGATGGTCTTAATAATACAGATTTTGTTATTAGGATGATTCATGATGTTCCACAAGGTAGAGAGATTTGTTTGAGTTATTTCCCTGTTAATGAAAACTATTCTAGTAGGCAGAAAAGATTGTTGGAAGACTATGGTTTTGCGTGTAATTGTGATCGATGTAATGTCGAATCGAATTGGTCAGATAATGAGAGTGTTGAAGAAAATGCAGAGGAGGATAAACAAGAGGTTATGGTTATGGATGATGATGAGGAGGCTCCTCTACCACCTAAGGGTGATACATTATCTAATGTCATGGAATGTAATGTCTGTGGTAAATTGAAGAGTGATGATGACGACATCAATGTTGATGATAAAGGGCAAGATGGAGAAGTTCCCATGGAGGACTAA 1098 0.3889 MAVPSSVLKVEEIQGRGRGIVASQPLKAGQIILTDSPILLYPTSLFSQHSSSFCDHCFKYCSSSSLASCPSCHRYRFCDSTCLSKALNSSHSTFVCQSLSKLQSNSLLLQQAVECQLQARFLVAAYNLAVNHPSNFQILLSLQGSFDNDGAAQFLHPIISSLFSHPHNELFSLQLTSSLLAKDKLNAFGIMHPFSENDEHRSVRAYGIYPYASFFNHDCLPNACRFDYVDANPPYHADGLNNTDFVIRMIHDVPQGREICLSYFPVNENYSSRQKRLLEDYGFACNCDRCNVESNWSDNESVEENAEEDKQEVMVMDDDEEAPLPPKGDTLSNVMECNVCGKLKSDDDDINVDDKGQDGEVPMED* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2009 365 Gene3D - 110 187 - -
Psa6g2009 365 Gene3D SET domain 19 290 IPR046341 -
Psa6g2009 365 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 322 354 IPR044238 -
Psa6g2009 365 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 3 321 IPR044238 -
Psa6g2009 365 SMART set_7 6 270 IPR001214 GO:0005515
Psa6g2009 365 CDD SET_SMYD 185 290 - -
Psa6g2009 365 Pfam SET domain 17 263 IPR001214 GO:0005515
Psa6g2009 365 SUPERFAMILY SET domain 4 285 IPR046341 -
Psa6g2009 365 ProSiteProfiles SET domain profile. 3 264 IPR001214 GO:0005515
Psa6g2009 365 Gene3D - 53 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2009 Psa-Chr6 129977915 129979123 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa6g2009 SET 1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2009 - - gmx:100783406 476.863