Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g2003 ATGGAGAAAGGAAATAATACAATGGGGATATCCAGGACAATATCAGATCAGCTTGTGGAGTCCGTCGCGGCGGCTCTAAAGTCGCCACAGTCGAGCGATCACTCGACTAACTCGGCGATTGAAGGGAGCGGAGGATTGTCGAGAAAATCAAGCCGGAGAATAACGTCGGCCTCGCCCGGGCACGGCGGAGGGAAGAATACACATATAAGGAAAACAAGGAGCGCTCAGTTGAAGATTGATGTTGATGAACTGAGCAGTGGCGCAGCTCTTAGCAGAGCTTCAAGCGCTAGCTTGGGTCTCTCGTTTTCTTTCACTGGCTTCACTATGCCCCCTGATCAAATTGCTGATACCAAACCGTTCAGTGATGATGACATGATTCCTGAGGATATTGAAGCTGGAATTAGGACAAAGACAAAGTTTCAAACAGAACCTACTCTTCCTATAAATCTAAAGTTCAATGATGTGACTTACAAGGTAGTGCTGAAAGGCATGACATCAAGTGTAGAGAAAGATATCTTAAATGGGATCAGTGGTTCTGTAAATCCAGGTGAAGTTTTGGCATTGATGGGTCCCTCAGGAAGTGGAAAGACAAGTCTTTTAAATCTCCTTGGAGGAAGGATAAGCCACCCAACAATTGGTGGTTCTATCACTTACAATGAACAATCATACTCCAAGTTTCTTAAGAGCAGGATAGGATTTGTGACGCAAGATGATGTTTTGTTTCCTCACCTAACTGTGAAAGAGACGTTGACATACGCAGCGCGGTTACGGCTTCCAAAAAGCTTCACTAAAGAGCAAAAGGAAAAAAGAGCTTTAGATGTCATCTATGAGCTTGGCTTGGAGAGGTGCCAAGATACTATGATTGGTGGTTCATTTGTTCGTGGAGTATCGGGTGGAGAGAGGAAGCGAGTTTGTATTGGCAATGAGATCATAATCAACCCTTCCATTTTGTTTCTTGATGAACCAACTTCTGGTTTGGATTCAACGACAGCCTTGAAGATCGTTCAGATGCTGCAAGACATAGCAGAGGCTGGTAAAACAGTAGTGACGACAATTCACCAACCATCAAGTAGACTCTTCCACAAATTCGACAAGTTGATCCTTCTTGGGAAAGGGAGTTTGCTTTACTTTGGAAAAGCATCAGAAGCAATGAATTACTTTCAATCTATAGGATGTTCACCGCTTATTTCCATGAATCCAGCCGAGTTTTTGCTAGACCTTGCGAATGGAAACATAAACGATGTTTCCGTACCATCAGAGTTGGAGGATAAAGTACAAATCGGAAATGCAGAAGTTGAAAAATATAATGGAAAACCATCACCAGCGGTAGTCCATGAGTATCTAGTGGAGGCATACGAATCTCAAGCTGCGGAAACGGAGAAGAAAAAAACAACGGTTTCTTTACCTCTGGATGAAGCTTTGAAGGCCAAAGTGAGTTCACCTAAAAGACAATGGGGAGCGAGTTGGGATGAACAATTTTCCATACTTTTTTGGAGAGGAATCAAGGAAAGGAGGCATGACTATTTTAGCTGGTTGAGAATCACACAAGTTTTATCCACCGCAATCATCTTAGGATTACTCTGGTGGCAATCAGATGCTAAAAACCCAAAAGACCTGCAAGATCAGGCGGGACTACTTTTCTTCATTGCTGTCTTCTGGGGATTCTTTCCGGTTTTTACTGCAATATTTACATTTCCTCAAGAGAGAGCAATGTTGAATAAGGAACGTGCGGCAGATATGTACAGATTAAGTGCATACTTCCTCGCTAGAACAACAAGCGACCTTCCGTTAGACCTGATATTACCAGTGCTTTTTCTCCTCGTTGTTTACTTCATGGCTGGTTTGAGACTAAGTGCTGCTCCCTTTTTCTTCACCATCCTTACTGTTTTCCTCTGCATCATTGCAGCACAGGGTCTTGGACTTGCTATCGGTGCTACGCTTATGGATTTGAAAAGAGCCACGACTTTGGCTTCAGTGACTGTGATGACCTTCATGTTGGCTGGAGGATTTTTCGTCCAGAAAGTCCCGATATTCATTTCATGGATCCGCTACATGTCTTTCAACTACCACACTTACAAACTGTTACTCAAGGTGCAATATGAACATTTCACGCCTATCGTAAACGGAGTTAAAATTGACAGTGGTTTAACAGAAGTAGCTGCTCTGATTGCTATGGTTTTCGGTTACCGTTTCTTGGCATATCTTTCATTGCGACGAATGAAACTTCAATAG 2232 0.4306 MEKGNNTMGISRTISDQLVESVAAALKSPQSSDHSTNSAIEGSGGLSRKSSRRITSASPGHGGGKNTHIRKTRSAQLKIDVDELSSGAALSRASSASLGLSFSFTGFTMPPDQIADTKPFSDDDMIPEDIEAGIRTKTKFQTEPTLPINLKFNDVTYKVVLKGMTSSVEKDILNGISGSVNPGEVLALMGPSGSGKTSLLNLLGGRISHPTIGGSITYNEQSYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPKSFTKEQKEKRALDVIYELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSILFLDEPTSGLDSTTALKIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMNYFQSIGCSPLISMNPAEFLLDLANGNINDVSVPSELEDKVQIGNAEVEKYNGKPSPAVVHEYLVEAYESQAAETEKKKTTVSLPLDEALKAKVSSPKRQWGASWDEQFSILFWRGIKERRHDYFSWLRITQVLSTAIILGLLWWQSDAKNPKDLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLNKERAADMYRLSAYFLARTTSDLPLDLILPVLFLLVVYFMAGLRLSAAPFFFTILTVFLCIIAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVQKVPIFISWIRYMSFNYHTYKLLLKVQYEHFTPIVNGVKIDSGLTEVAALIAMVFGYRFLAYLSLRRMKLQ* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g2003 743 ProSitePatterns ABC transporters family signature. 296 310 IPR017871 GO:0005524
Psa6g2003 743 MobiDBLite consensus disorder prediction 25 71 - -
Psa6g2003 743 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 150 396 IPR003439 GO:0005524
Psa6g2003 743 PANTHER PIGMENT PERMEASE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 15 740 - -
Psa6g2003 743 SMART AAA_5 182 373 IPR003593 -
Psa6g2003 743 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 15 740 - -
Psa6g2003 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 388 IPR027417 -
Psa6g2003 743 MobiDBLite consensus disorder prediction 25 62 - -
Psa6g2003 743 Pfam ABC transporter 173 324 IPR003439 GO:0005524
Psa6g2003 743 Gene3D - 149 390 IPR027417 -
Psa6g2003 743 Pfam ABC-2 type transporter 491 700 IPR013525 GO:0016020|GO:0140359
Psa6g2003 743 Pfam ABC-2 type transporter 353 456 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g2003 Psa-Chr6 129406509 129414064 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g2003 143 410 Calmodulin-binding Proteins AT2G36910 29.078 2.06e-16 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g2003 K05681 - gmx:100798801 1237.25