Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1995 ATGGGCAACAACTGCGTCGGACCAAACCTTGGTGGGAATGGCTTCCTTCAATCCGTTTCGGCGGCCGTTTGGAAAACCCGACCGCCAGAGCAGAGGCTTCCTCCACCTAACGCCGAGGAGAAAGAAAAAACTCTACCGCCGGAAAATGCTGTGAAGGATTCCTCTAAAACTGAGTCGAGTTCCTCCGGAAAAGGTTCGGAACGTATTGATAATCCTCCCATGCCGGTTCAGAACACACCACCTGAACCGGTGAAAATAGCCACCCAAGAAACAAAACCGCTTCCGGTTGAACATGAGAAGCCGGTTAGACTAGAGGTAAATACTACACCGCCGGCAACTAGTACTGCTGGGGGCGGTGGTGGTGGTGGTGGTGATGATGGAGGAGGTGGTGGGGAGGGTGATGCAGGAAAAGCTAAGAAACCTACACATGTGAAAAGGGTATCAAGTGTTGGACTCCAGGTAGAGTCTGTATTGGGTAGAAAAACAGAGAACATAAAGGACTTTTATAGTTTGGGGAGAAAATTAGGGCAAGGTCAATTCGGGACAACATTTCTATGTATGGAGAAAGGGACTAACAAGCAATTTGCATGCAAATCAATTGCGAAGAGGAAATTAACAACACAAGAGGATGTTGAGGATGTTAGGAGGGAGATTCAGATAATGCATCACTTAGCTGGTCACCCAAATGTGATACAAATAATTGGTGCTTATGAAGATGCTGTTGCTGTTCATGTTGTTATGGATTTATGTGCTGGTGGTGAGCTTTTTGATAGGATTATACAGAGAGGACATTATACTGAGAGAAAAGCTGCTGAACTTGCTAGGTTGATTTTAGCTGTTGTTCAGGCTTGTCATGCTTTAGGTGTTATGCATAGGGATTTGAAGCCTGAGAATTTTCTATTTGTTAACCATGAAGAAGAATCACCTCTTAAGACAATAGATTTTGGACTCTCTGTGTTTTTTAGACCAGGTGAATTATTTACTGATGTGGTTGGAAGCCCATACTATGTGGCCCCTGAAGTTTTGCGGAAGAACTATGGTCAAGAATGTGATGTTTGGAGCGCTGGGGTGATCATTTATATTTTACTCAGCGGCGTTCCCCCATTTTGGGATGAAACGGAACAAGGAATATTTGAGCAAGTATTGAAAGGAGAGCTTGATTTTCAATCTGAACCATGGCCCAGCATATCTGCCAGTGCAAAGGATCTTGTTCGAAGAATGCTTGTAAGGGACCCTAAGAAGCGGTTGACGGCACATGAAGCAGACATTGATAATAGTGGTACCATAGACTATGGTGAATTCATAGCAGCTATGCTTCATCTAAACAAGGTCCAAAAGGAGGATCACCTATTTGCAGCCTTTAACTACTTTGACAAAGATGGTAGTGGATACATTACGAAGGATGAACTTCAACAAGCCTGTCAACAGTTTGGCTTACAAGAAGATCATCTAGATGATATAATACGTGAAGCTGATAAGGATAATGACGGACACATTGACTACAGTGAATTTGTTGCAATGATGCAAGACACTGATTTTGGCAAAAAGGGGATACAAACATCATGA 1566 0.4342 MGNNCVGPNLGGNGFLQSVSAAVWKTRPPEQRLPPPNAEEKEKTLPPENAVKDSSKTESSSSGKGSERIDNPPMPVQNTPPEPVKIATQETKPLPVEHEKPVRLEVNTTPPATSTAGGGGGGGGDDGGGGGEGDAGKAKKPTHVKRVSSVGLQVESVLGRKTENIKDFYSLGRKLGQGQFGTTFLCMEKGTNKQFACKSIAKRKLTTQEDVEDVRREIQIMHHLAGHPNVIQIIGAYEDAVAVHVVMDLCAGGELFDRIIQRGHYTERKAAELARLILAVVQACHALGVMHRDLKPENFLFVNHEEESPLKTIDFGLSVFFRPGELFTDVVGSPYYVAPEVLRKNYGQECDVWSAGVIIYILLSGVPPFWDETEQGIFEQVLKGELDFQSEPWPSISASAKDLVRRMLVRDPKKRLTAHEADIDNSGTIDYGEFIAAMLHLNKVQKEDHLFAAFNYFDKDGSGYITKDELQQACQQFGLQEDHLDDIIREADKDNDGHIDYSEFVAMMQDTDFGKKGIQTS* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1995 521 MobiDBLite consensus disorder prediction 34 49 - -
Psa6g1995 521 Pfam Protein kinase domain 169 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1995 521 SMART serkin_6 169 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1995 521 ProSitePatterns Protein kinases ATP-binding region signature. 175 202 IPR017441 GO:0005524
Psa6g1995 521 Pfam EF-hand domain pair 420 440 IPR002048 GO:0005509
Psa6g1995 521 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 2 48 420 - -
Psa6g1995 521 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 2 421 513 - -
Psa6g1995 521 ProSiteProfiles EF-hand calcium-binding domain profile. 481 514 IPR002048 GO:0005509
Psa6g1995 521 MobiDBLite consensus disorder prediction 21 144 - -
Psa6g1995 521 ProSiteProfiles Protein kinase domain profile. 169 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1995 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 289 301 IPR008271 GO:0004672|GO:0006468
Psa6g1995 521 ProSitePatterns EF-hand calcium-binding domain. 422 434 IPR018247 -
Psa6g1995 521 SMART efh_1 413 441 IPR002048 GO:0005509
Psa6g1995 521 SMART efh_1 483 511 IPR002048 GO:0005509
Psa6g1995 521 SMART efh_1 449 477 IPR002048 GO:0005509
Psa6g1995 521 ProSitePatterns EF-hand calcium-binding domain. 458 470 IPR018247 -
Psa6g1995 521 CDD EFh 449 509 IPR002048 GO:0005509
Psa6g1995 521 CDD EFh 422 473 IPR002048 GO:0005509
Psa6g1995 521 SUPERFAMILY EF-hand 419 509 IPR011992 -
Psa6g1995 521 ProSiteProfiles EF-hand calcium-binding domain profile. 445 480 IPR002048 GO:0005509
Psa6g1995 521 Gene3D Phosphorylase Kinase; domain 1 171 255 - -
Psa6g1995 521 Gene3D - 443 521 - -
Psa6g1995 521 Pfam EF-hand domain pair 448 509 IPR002048 GO:0005509
Psa6g1995 521 Gene3D Transferase(Phosphotransferase) domain 1 256 439 - -
Psa6g1995 521 MobiDBLite consensus disorder prediction 50 67 - -
Psa6g1995 521 PANTHER SERINE/THREONINE-PROTEIN KINASE 421 513 - -
Psa6g1995 521 PANTHER SERINE/THREONINE-PROTEIN KINASE 48 420 - -
Psa6g1995 521 ProSitePatterns EF-hand calcium-binding domain. 492 504 IPR018247 -
Psa6g1995 521 CDD STKc_CAMK 168 421 - -
Psa6g1995 521 SUPERFAMILY Protein kinase-like (PK-like) 167 421 IPR011009 -
Psa6g1995 521 ProSiteProfiles EF-hand calcium-binding domain profile. 419 444 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1995 Psa-Chr6 128195145 128204277 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1995 421 521 EF-hand Containing Proteins AT2G38910 80.198 5.42e-50 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Psa6g1995 Pkinase 1.2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1995 K13412 - gmx:100813232 661.373