Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1985 ATGGGAACTCCAGAATTTCCTGATCTAGGAAAACACTGTGCCGTTTCGGATTGCAAGCTCATTGATTTCTTACCCTTCACATGCGACCGATGCAACCAGGTGTATTGTTTGGAACACCGAAGCTATATCAAACATCAGTGTACAAAAGCTGACAAGCAAGATGTCACTGTAGTAATATGTCCACTTTGTGCGAAAGGAGTTCGCCTAATTCCTGATCAAGATCCAAACATAACATGGGAGAATCATGTGAACACCGACTGCGACCCATCAAATTATGAGAAAGCTACAAAAAAGAAAAAATGCCCTGCAGCTGGATGCAAAGAGATCTTAGTATTCTCAAACACAATTAAGTGCAGGGATTGCATGGTAGACCATTGTTTGAAGCATAGGTTTGGACCTGATCACAAATGTCCGGGGCCTAAAAAATTGGAATCAAGTTTCTCTTTTATGAACCTTATGAATAGGAATAGAAAACAGGAGTCTAAACCGAATTCAAGTTCAACCTCCTCCTCATCTAAGTGGACAACAAGCTTTCTTAATGCCGCTTCTAATATCCGAGCTTCAGCTGAGTCTGGAATTTCAAAGTTGAGTGGTGAAATTAATCAAGCCTGGGGGACATCAAATGATGTGGGGGGAAAGAGCAATAGCAGTGGTCAAGTGGAGCAATGCCCTCAATGTGGTGCCAAGTTTTCTTCAGTAACTTCTTTGGTCGATCATGTACAGAAAGTTCATGAAAGAAGCAGTAACCGATCTGCGGAAAAAGTTACGATTGATGCATGTCCAAAGTGTAGTAAAGGATTCAGAGATCCTGTGTCCCTTGTGGAGCATGTTGAGAGGGATCATGGTGGCACTTCTAGAGCATAG 864 0.4225 MGTPEFPDLGKHCAVSDCKLIDFLPFTCDRCNQVYCLEHRSYIKHQCTKADKQDVTVVICPLCAKGVRLIPDQDPNITWENHVNTDCDPSNYEKATKKKKCPAAGCKEILVFSNTIKCRDCMVDHCLKHRFGPDHKCPGPKKLESSFSFMNLMNRNRKQESKPNSSSTSSSSKWTTSFLNAASNIRASAESGISKLSGEINQAWGTSNDVGGKSNSSGQVEQCPQCGAKFSSVTSLVDHVQKVHERSSNRSAEKVTIDACPKCSKGFRDPVSLVEHVERDHGGTSRA* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1985 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 221 249 IPR013087 -
Psa6g1985 287 SUPERFAMILY AN1-like Zinc finger 6 51 IPR035896 -
Psa6g1985 287 Gene3D Classic Zinc Finger 197 284 - -
Psa6g1985 287 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Psa6g1985 287 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Psa6g1985 287 ProSitePatterns Zinc finger C2H2 type domain signature. 260 281 IPR013087 -
Psa6g1985 287 Gene3D - 2 60 IPR035896 -
Psa6g1985 287 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Psa6g1985 287 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 287 - -
Psa6g1985 287 Pfam zinc-finger C2H2-type 222 244 IPR041697 -
Psa6g1985 287 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Psa6g1985 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 258 286 IPR013087 -
Psa6g1985 287 SUPERFAMILY AN1-like Zinc finger 93 147 IPR035896 -
Psa6g1985 287 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Psa6g1985 287 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Psa6g1985 287 ProSitePatterns Zinc finger C2H2 type domain signature. 223 244 IPR013087 -
Psa6g1985 287 SMART c2h2final6 258 281 IPR013087 -
Psa6g1985 287 SMART c2h2final6 221 244 IPR013087 -
Psa6g1985 287 SUPERFAMILY beta-beta-alpha zinc fingers 222 277 IPR036236 -
Psa6g1985 287 Gene3D - 80 164 IPR035896 -
Psa6g1985 287 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1985 Psa-Chr6 127054178 127056881 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1985 1 287 C2H2 Transcription Factor Family AT2G41835 64.236 5.60e-130 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa6g1985 zf-AN1 1.1e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1985 6 127054178 127056881 Psa6g1985 6 127054178 127056881 ECH