Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1940 ATGAACAACACAACCGATTCATCTGGATTCTTTGGCTCAAATGACATAAGTGGTTTTGGCTATGGCATAGGAATTTCCATTGGGATTCTCTTACTCATCACAACAATCACACTCACTTCTTACTTTTGTACAAGATCACAAGTTCCAAATGCTCCTAGAAGAAGAAACAGCAACAATAACACCTCTGAATTCCTAGAGCCACAACATTCAATAGTTGACTTGGGATTAGATGAAGAAACAATCATGAGTTATCCAAAGATGTTGTATTCTGAAGTGAAGCTTAGAAAAAATGATTCAACATCAACATGTTGTTCTATTTGTTTGGGTGATTACAAAGGAAGTGACATGCTTAAGGTTTTGCCAGATTGTGAACATTTGTTTCATCTCAAGTGTATAGAACCTTGGTTAAGGTTGCATCCTACTTGTCCTCTTTGTAGAACTTCACCAATTCCAACCCCTCTTTCAACACCTTTGGCTGAGGTTGTTCCATTAGCTACAAGGAGAGATTCATCCTAG 516 0.3779 MNNTTDSSGFFGSNDISGFGYGIGISIGILLLITTITLTSYFCTRSQVPNAPRRRNSNNNTSEFLEPQHSIVDLGLDEETIMSYPKMLYSEVKLRKNDSTSTCCSICLGDYKGSDMLKVLPDCEHLFHLKCIEPWLRLHPTCPLCRTSPIPTPLSTPLAEVVPLATRRDSS* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1940 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 150 IPR013083 -
Psa6g1940 171 Pfam Ring finger domain 104 146 IPR001841 -
Psa6g1940 171 SUPERFAMILY RING/U-box 80 151 - -
Psa6g1940 171 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Psa6g1940 171 PANTHER RING-H2 FINGER PROTEIN ATL70-LIKE 5 168 - -
Psa6g1940 171 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 168 IPR045899 -
Psa6g1940 171 SMART ring_2 104 145 IPR001841 -
Psa6g1940 171 CDD RING-H2_PA-TM-RING 103 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1940 Psa-Chr6 119642869 119643990 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1940 6 166 C3H Transcription Factor Family AT2G35910 61.728 7.18e-61 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1940 - - gmx:121172638 255.373