Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1923 ATGATCAAGAAACAAAAACGAAAGGAGAAACCCCAAAAACTGGTGGTGCTAATAAGGCCAACGGAAAAAGGGATTAGGTCTAGATACGAGTTAGGGAGGGAACTAGCAAGAGTAGAATTTAGAACTATATACTTTTGCAAAGACAAAATTACGGGAGAGGAACTTGCGTGCAAGTCGATTTCCAAGAATAAGCTTAAAACAGCTACTCTTATTGAAGATGTGAGAAGAGAGGTTGCTATCTTGAGGCATTTACCTAAACACCCTAACATCGCTTCCTTGGAGGATATTCATGAAGACGACGATCACGTTCATCTTTTAATGGAATTCTGTGAAGGTGATGCGCTTTTCGATCGAATCGTTGCTAGAGGACATTACACAGAACGCGCCGCAGCTTCTGTCATCAAGACCATCGTGGAAGTTGTTCAGATGTGCCACAAACATGGTGTGATGCATCGGGATCTTAAACCCGAGAACTTTTTATTTGCTGGCAAGAAGGAAACCTCACCTTTGAAGGCTATTGACTTTGGTTTGTCAACTTTCTTTGAACCAGGTGAAAGATTTAATGAGATAGTTGGAAGTACATATTACATAGCCCCTGAAGTTTTAAAAAGAAATTATGGCCCTGAAGTTGATATCTGGAGTGCTGGAGTCATTCTTTACATCTTACTTTGTGGTGTCCCTCCCTTTTGGGCAGAAACGGAGCAGGGAGTTGCTCAAGCAATTATACGGTCAGTTCTTGACAGGTCAGTTCTTGACTTCAAAAGGGAGCCATGGCCAAAGGTTTCTGATAATGCAAAAGACCTTGTTAAGAAGATGCTTGATCCTGATCCTAAGCGCCGGCTTACTGCACAGGAAGTGTTAGATCATCCATGGTTGCAGAATGCAAGGACAGCTCCTGATGTTGCATTAGGAGAAACCGTTAGAGCAAGGCTGATTCAATTTTCAGTAATGAACAAACTTAAGGAAACAGCATTGATGGTGATTGCAGATCATTTGTCTGTAGAAGAAGTTTCTGGAATTAAAGAGGGATTCCATGTGATGGACACAAAAAATAATGGAAAAATTAACATTGACGATCTTCGAGTAGGGTTGCAAAAGCTAGGCCACCAAATTCCTGATGCAGCTATCCAAATACTTATGGAAGCAAGCGATGTAGACAAAGATGGTTACCTAGATTTTGGAGAGTTTGTCGCCATTTCTATTCATCTCAGAAATATATCCCATGATGAACACCTCCTTAGAGCATTCCAATTTTTTGATAAAAACGAATCTGGGTATATTGAACTTGAGGAGTTATGTAATGCATTAGCTGATGAGATTGACAAAAACAGTGAAGTAATTAATGCAATTATGCATGATGTGGACACAGACAAGGATGGAAAAATAAGTTATATAGAATTTGCTGCAATGATGAAGGATGTAACATATTAG 1431 0.399 MIKKQKRKEKPQKLVVLIRPTEKGIRSRYELGRELARVEFRTIYFCKDKITGEELACKSISKNKLKTATLIEDVRREVAILRHLPKHPNIASLEDIHEDDDHVHLLMEFCEGDALFDRIVARGHYTERAAASVIKTIVEVVQMCHKHGVMHRDLKPENFLFAGKKETSPLKAIDFGLSTFFEPGERFNEIVGSTYYIAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVLDRSVLDFKREPWPKVSDNAKDLVKKMLDPDPKRRLTAQEVLDHPWLQNARTAPDVALGETVRARLIQFSVMNKLKETALMVIADHLSVEEVSGIKEGFHVMDTKNNGKINIDDLRVGLQKLGHQIPDAAIQILMEASDVDKDGYLDFGEFVAISIHLRNISHDEHLLRAFQFFDKNESGYIELEELCNALADEIDKNSEVINAIMHDVDTDKDGKISYIEFAAMMKDVTY* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1923 476 Gene3D Phosphorylase Kinase; domain 1 19 110 - -
Psa6g1923 476 ProSiteProfiles EF-hand calcium-binding domain profile. 335 370 IPR002048 GO:0005509
Psa6g1923 476 ProSiteProfiles Protein kinase domain profile. 29 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1923 476 Pfam Protein kinase domain 34 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1923 476 Pfam EF-hand domain pair 410 472 IPR002048 GO:0005509
Psa6g1923 476 Pfam EF-hand domain pair 340 399 IPR002048 GO:0005509
Psa6g1923 476 ProSitePatterns EF-hand calcium-binding domain. 384 396 IPR018247 -
Psa6g1923 476 Gene3D - 301 475 - -
Psa6g1923 476 SUPERFAMILY Protein kinase-like (PK-like) 26 304 IPR011009 -
Psa6g1923 476 SMART serkin_6 29 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1923 476 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 474 - -
Psa6g1923 476 CDD EFh 411 472 IPR002048 GO:0005509
Psa6g1923 476 ProSiteProfiles EF-hand calcium-binding domain profile. 371 406 IPR002048 GO:0005509
Psa6g1923 476 ProSitePatterns EF-hand calcium-binding domain. 420 432 IPR018247 -
Psa6g1923 476 Gene3D Transferase(Phosphotransferase) domain 1 111 300 - -
Psa6g1923 476 ProSitePatterns EF-hand calcium-binding domain. 455 467 IPR018247 -
Psa6g1923 476 ProSiteProfiles EF-hand calcium-binding domain profile. 407 442 IPR002048 GO:0005509
Psa6g1923 476 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 8 6 474 - -
Psa6g1923 476 ProSiteProfiles EF-hand calcium-binding domain profile. 445 476 IPR002048 GO:0005509
Psa6g1923 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Psa6g1923 476 SMART efh_1 446 474 IPR002048 GO:0005509
Psa6g1923 476 SMART efh_1 339 367 IPR002048 GO:0005509
Psa6g1923 476 SMART efh_1 375 403 IPR002048 GO:0005509
Psa6g1923 476 SMART efh_1 411 439 IPR002048 GO:0005509
Psa6g1923 476 CDD STKc_CAMK 28 291 - -
Psa6g1923 476 SUPERFAMILY EF-hand 316 473 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1923 Psa-Chr6 117968529 117971198 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1923 13 475 EF-hand Containing Proteins AT5G19450 71.613 0.0 690
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Psa6g1923 Pkinase 1.2e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1923 K13412 - gmx:100778471 726.472