Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1913 ATGATCGGAGGTTTGCATTGCCCTTTCAGGGAGTTTCATTGTTTCCCTGATGGCAAAGATGTCGGAAGTCTCATTATAGGTGTTATAAAACCATATGCAATAGACTCCAATAAACTTGGTGCAAATGAGGGGATTATATTGGACACAAGGTTGTTAGAGCGAGTATTCACAACAATTGTCTTCACTGTAAAGAGCATACCTCTTAAGTGTCATCTTGCTTTCTCTCAGGCATTGAAAGATACACTTCTCAAGGTGGTTGTTGATCTAGGATCTGTAGATGGTCTTGCCAAGTTAGTTGGTAGTGTGTTGGGAAACTCTGAGCAAGATACGTTGGGTCATAAGGGAGTTCATATTAAAGATAAATATGTAAATGTGAGCTCTAATGTCAAGCAATTCCTTCGTAAGGTTGCAAATGGTCACTTCATAGCGGCTATGAAAATGTTGGGGTCATCTGGTGTAGCCCCATGTAATGCACATACTATGAAGGCTTTAGAGGCTAAACACCCGTACAAACCACCTCCTTCCATGTTGACTATACAATTGGTGTCTAAGGTTACAATGAAATGGGCCAGTAAGGATGTGACACGATATCTCAATGACTTCCAATTTGGAGTTGGGGTATCGGGTGGTGCCGAGGGGATTTTGCACAATGCCAATAGGGTGTTAAGCAAGCAACATAGTGATGGCTCTTTGACTATGCTCACTATCAGTGACAATTGTAAGCTTCTTCTTCATGCCTGGTACCTTGATGATGAGACCATCATATGGGAATCAGAGGAGGTGACTAAGGCCCTCAACATCATCTGGGATCCCGGTCCAGGATTAGGTCCTTTCTTCGGGAACCTTCAATTAAGGGTGACTTCTTTACCTATTAGAGTTGGGGGATCAGACGCCGTCGGCATAAACATGAAGGTGATCGCCGCATACTTGCTCGCCGTTCTCGGAGGCAACAACACCCCCTCCGCCAAAACCATCAAGGACATCCTTGGATCCGTTGGAGCAGAAGCAGAAGATGGCAACATTGAATTGTTTTTGTCTGAAATTAAGGGCAAAGATATAGCTGAGGTGATTGCTTCTGGTAAGGAAAAGTTGGCATCAGTGCCTTCTGGTGGTGGTGGTGGCGGTGTTGCTGTTGGTGCTGCACCTGCGAGTGGTGGTGCTGCTCCTGCAGCTGCCGAGGCAAAGAAAGAGGAGAAGGTTGAAGAGAAAGAGGAATCTGATGATGATATGGGATTCAGCCTTTTTGATTAA 1251 0.4484 MIGGLHCPFREFHCFPDGKDVGSLIIGVIKPYAIDSNKLGANEGIILDTRLLERVFTTIVFTVKSIPLKCHLAFSQALKDTLLKVVVDLGSVDGLAKLVGSVLGNSEQDTLGHKGVHIKDKYVNVSSNVKQFLRKVANGHFIAAMKMLGSSGVAPCNAHTMKALEAKHPYKPPPSMLTIQLVSKVTMKWASKDVTRYLNDFQFGVGVSGGAEGILHNANRVLSKQHSDGSLTMLTISDNCKLLLHAWYLDDETIIWESEEVTKALNIIWDPGPGLGPFFGNLQLRVTSLPIRVGGSDAVGINMKVIAAYLLAVLGGNNTPSAKTIKDILGSVGAEAEDGNIELFLSEIKGKDIAEVIASGKEKLASVPSGGGGGGVAVGAAPASGGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1913 416 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2A-LIKE 258 416 - -
Psa6g1913 416 CDD Ribosomal_P2 303 364 IPR044076 GO:0002182|GO:0003735|GO:0022625
Psa6g1913 416 MobiDBLite consensus disorder prediction 387 416 - -
Psa6g1913 416 Gene3D - 302 361 IPR038716 -
Psa6g1913 416 Pfam 60s Acidic ribosomal protein 320 415 - -
Psa6g1913 416 Hamap 50S ribosomal protein L12 [rpl12]. 304 416 IPR027534 GO:0003735|GO:0005840|GO:0006414
Psa6g1913 416 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 258 416 IPR044076 GO:0002182|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1913 Psa-Chr6 117053173 117059649 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1913 303 416 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 70.175 4.65e-29 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1913 K02943 - vvi:100254522 120.938