Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1910 ATGTCTGGTGGTGGTGCTGGAGCTTCTGACCGTGGCTCGCCGATGCCGAGGGAGACTGCCGGAGCACCGAGTAGACCGCCATTGAAGCGTCATCTTGCGTTTGTCTCGACGAAACCACCATTTGCACCGTTGGATGAGTATCGCAGTTTTGCCGCCGTCGATTCTAGGAAAGCCTCCGATCACGTGACTGAAGCAGTTGTTATCAGATCTCCGGTCATAAAGCGGAAGAATGGAATGAATGAAAGTGAAGGAGAATCGCAAAAGTGGACTAACAGCCCTGGATACACTAATGTAATCAATAGTCCCTTTAAAACTCCATTGTCTGCAAAAGATGGAAGGACAAACAAGTCTAGGGTTTCCAAAGAAGGAAGATCATGTCCTCCAACACCTATCTCAAATGCTGGTTCCCCTTCTCCTCTTACTCCTGCTGGTAGCTGTCGTTATGACAGTTCCTTAGGTCTCTTGACAAAAAAGTTCATCAATTTGATCAAGCGTGCAGAGGATGGCATTCTTGACCTAAATAAAGCAGCAGAAACTCTGGAGGTGCAAAAGAGGAGGATATATGACATAACTAATGTTTTGGAAGGCATTGGTCTCATCGAAAAGAATCTCAAGAACAGAATACATTGGAAAGGAATTGAATCTTCTACGCCTGGTAATATGGACGGTGATATCTCTATGCTTAAGTCAGAAGTTGAAAAACTTTCTTTGGAAGAGCAGAGTCTAGATGATCAAATAAGGGAAATGCAAGAACGGCTGAGAAGTTTGAGTGAAGATGAAAATAACCAGAAGTTCCTTTTTGTGACCGAGGAAGATATTAAGGGCCTACCTTGCTTCCAGAATGAAACTTTGATAGCAATCAAAGCTCCACATGGAACCACCTTGGAAGTCCCTGATCCTGAAGAAGCCGTTGACTATCTACAGAGGAGATATAGAATCATTCTTAGGAGCACAATGGGTCCCATCGATGTCTACCTTATCAGTCAATTTGAAGAGAAATTTGAAGAGATTAATGGTGCTGAGCCCCCCATGAGCTTACCTCTTGCTTCAAGTTCAGGGTCTAATGAGCAACAAGTGACGGAAATGGCTCCTGCTGAATGCAGTGGTAACGGACTCGAACCCCAAGCTCTCCTCTCTTCCCAGACATACTCTGATCTAAATGTTTCCCAAGAGTTTGCTGGGGGCATGATGAAGATTGTCCCTTCAGATGCTGATAATGATGCTGATTATTGGCTTCTATCAGATGCTGAAGTTAGCATAACAGATATGTGGAGAACAGATTCTAATGTTGATTGGAGTGGAGTGGACATGCTTCATCCTGACTTTGAAATGATCTCGAGGCCACAAACTCCATCGCCTGGACTTGCAGAAGCACCACCGACTGTAGCTAACCCTAATCAGAGGTGA 1407 0.4463 MSGGGAGASDRGSPMPRETAGAPSRPPLKRHLAFVSTKPPFAPLDEYRSFAAVDSRKASDHVTEAVVIRSPVIKRKNGMNESEGESQKWTNSPGYTNVINSPFKTPLSAKDGRTNKSRVSKEGRSCPPTPISNAGSPSPLTPAGSCRYDSSLGLLTKKFINLIKRAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKNLKNRIHWKGIESSTPGNMDGDISMLKSEVEKLSLEEQSLDDQIREMQERLRSLSEDENNQKFLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPEEAVDYLQRRYRIILRSTMGPIDVYLISQFEEKFEEINGAEPPMSLPLASSSGSNEQQVTEMAPAECSGNGLEPQALLSSQTYSDLNVSQEFAGGMMKIVPSDADNDADYWLLSDAEVSITDMWRTDSNVDWSGVDMLHPDFEMISRPQTPSPGLAEAPPTVANPNQR* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1910 468 MobiDBLite consensus disorder prediction 445 468 - -
Psa6g1910 468 PANTHER TRANSCRIPTION FACTOR E2FB 25 451 - -
Psa6g1910 468 PANTHER TRANSCRIPTION FACTOR E2F 25 451 IPR015633 GO:0000978|GO:0006357
Psa6g1910 468 SMART E2F_TDP_2 147 212 IPR003316 GO:0005667|GO:0006355
Psa6g1910 468 Coils Coil 163 183 - -
Psa6g1910 468 MobiDBLite consensus disorder prediction 1 28 - -
Psa6g1910 468 Coils Coil 225 259 - -
Psa6g1910 468 CDD E2F_DD 228 329 IPR032198 GO:0046983
Psa6g1910 468 Gene3D - 141 214 IPR036388 -
Psa6g1910 468 SUPERFAMILY "Winged helix" DNA-binding domain 147 210 IPR036390 -
Psa6g1910 468 Pfam E2F/DP family winged-helix DNA-binding domain 149 212 IPR003316 GO:0005667|GO:0006355
Psa6g1910 468 Pfam E2F transcription factor CC-MB domain 228 328 IPR032198 GO:0046983
Psa6g1910 468 SUPERFAMILY E2F-DP heterodimerization region 225 329 IPR037241 -
Psa6g1910 468 MobiDBLite consensus disorder prediction 101 139 - -
Psa6g1910 468 Gene3D - 219 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1910 Psa-Chr6 117013014 117019702 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1910 23 468 E2F-DP Transcription Factor Family AT2G36010 56.476 9.27e-170 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Psa6g1910 E2F_CC-MB 7.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1910 K06620 - gmx:100811762 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1910 6 117013014 117019702 Psa6g1910 6 117013014 117019702 ECH