Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1898 ATGGATCTTCCAGAAACATCACTCTGGTGGACTCAACACCATCAACAACAACAACCTATGATGTTACTAGAACCAATCCAAACCACTCCTTGGCCACTCCACCACCACCAACCACCATGGTTCACTTCACAAATCCATGAAAACGAAGATGAACAAGTAGAAAACGACACCACCGTTGTAATAAAACCCGAAGACGAAAAAGAACCAATGTTCGAGAAACCATTAACACCAAGCGACGTAGGAAAGCTCAACCGTCTGGTTATCCCAAAGCAATACGCGGAAAGATACTTCCCACTCGGCGGTGGTGACTCGGGTGAGTGCAAGGGCTTGTTACTGAGTTTCGAGGACGAGTCAGGGAAGTGTTGGCGATTCCGTTACTCGTATTGGAACAGTAGTCAAAGCTACGTGTTGACTAAAGGTTGGAGTCGTTATGTGAAAGATAAGCGTCTCGATGCTGGCGACGTCGTTTTGTTTGAACGACACCGTGTTGATAGTCAGCGTCTTTTTATCAACTGGAGGAGGAGGAATGGGAATGATGAGTCAGCGTATGTTAGCAGAGGGGTGGGACAACAAGGGAAGGGGGGTGATAAGAATGAAGTTGTAGGCGTGGGTGTTGGGTGGTCCAGAGGATTCTATTCTACGCACTTGCCTTATCCTGCGCATCACCATCATCATCATCAGGTTTTGTCATACCAACATGAGCACTGTCTTCATGGAGGTAGAGTGTCCCAAGAACAGAACCAAAGGACGAAACCGGTAGGAAACAGTTCAAGTTCAAGGGTACTTAGGTTGTTTGGTGTTAACATGGAATGCCAACCAGAACATGAACATGAACATGATTCTTCTTCAACACCTCAATGTTCTTATGATACTAACAACAATAATAATATGTCACTAACACAATATCATCAACCTAATACTTCTAATTCTAACCCTCACGTGGTACGTCACCAACCATATTATTACTAG 969 0.4469 MDLPETSLWWTQHHQQQQPMMLLEPIQTTPWPLHHHQPPWFTSQIHENEDEQVENDTTVVIKPEDEKEPMFEKPLTPSDVGKLNRLVIPKQYAERYFPLGGGDSGECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRVDSQRLFINWRRRNGNDESAYVSRGVGQQGKGGDKNEVVGVGVGWSRGFYSTHLPYPAHHHHHHQVLSYQHEHCLHGGRVSQEQNQRTKPVGNSSSSRVLRLFGVNMECQPEHEHEHDSSSTPQCSYDTNNNNNMSLTQYHQPNTSNSNPHVVRHQPYYY* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1898 322 SUPERFAMILY DNA-binding pseudobarrel domain 66 176 IPR015300 -
Psa6g1898 322 Gene3D - 61 186 IPR015300 -
Psa6g1898 322 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 21 288 IPR044800 GO:0003700
Psa6g1898 322 SMART B3_2 71 176 IPR003340 GO:0003677
Psa6g1898 322 ProSiteProfiles B3 DNA-binding domain profile. 71 176 IPR003340 GO:0003677
Psa6g1898 322 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 21 288 - -
Psa6g1898 322 CDD B3_DNA 69 166 IPR003340 GO:0003677
Psa6g1898 322 Pfam B3 DNA binding domain 71 176 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1898 Psa-Chr6 116101838 116104876 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1898 64 281 RAV Transcription Factor Family AT5G06250 48.707 3.93e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa6g1898 B3 4.2e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1898 - - cam:101511950 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1898 6 116101838 116104876 Psa6g1898 6 116101838 116104876 ECH