LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa6g1893	ATGGGTCGTGTCAGAACCAAAACCGTGAAGAAATCCTCGAGACAAGTCATCGAGCGTTACTACTCTCGAATGACCTTGGATTTCCACACCAACAAGAAAATCCTCGAGGAAGTCGCACTCATTCCAACCAAGAGGCTTCGCAACAAAATCGCTGGGTTTTCAACTCATTTGATGAAGAGGATTCAGAAGGGACCTGTTCGTGGAATCTCGTTGAAGCTACAAGAGGAGGAGCGTGAGAGGCGTATGGATTTCGTTCCTGATGTGTCTGCTATCAGGACTGATCACATTGAGGTTGATAAGGAGACGCTTGATATGCTTGCTGCTCTTGGGATGTCGGAGATTCCCGGTGTTGTGCAGGTCGATCCGGTCGCTGTTCAACCAATTCCGTTCGGCCGTGGTGCTGGAGCTGCTGGTGGACCTGGTGGAAGGAGGTTTTGA	438	0.5	MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVALIPTKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIRTDHIEVDKETLDMLAALGMSEIPGVVQVDPVAVQPIPFGRGAGAAGGPGGRRF*	146

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa6g1893	145	Hamap	30S ribosomal protein S17e [rps17e].	1	63	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Psa6g1893	145	PANTHER	40S RIBOSOMAL PROTEIN S17	1	137	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Psa6g1893	145	PANTHER	40S RIBOSOMAL PROTEIN S17	1	137	-	-
	Psa6g1893	145	Pfam	Ribosomal S17	1	120	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Psa6g1893	145	SUPERFAMILY	Rps17e-like	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Psa6g1893	145	ProSitePatterns	Ribosomal protein S17e signature.	41	56	IPR018273	GO:0003735\|GO:0005840\|GO:0006412
	Psa6g1893	145	Gene3D	-	1	62	IPR036401	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa6g1893	Psa-Chr6	115067342	115069122	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa6g1893	1	145	Cytoplasmic Ribosomal Protein Gene Family	AT5G04800	78.767	7.40e-78	225

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa6g1893	K02962		-	gmx:100785402	239.965