Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1856 ATGGCGGAAGAACAACCGTGTCAAGCTCCTGAAGGTCACCGTCTTTGCGCCAACAACTGCGGCATCCTCGGTAATCCGGCAACCATGAACCTCTGCTCGAAATGCTACGGTGATATCCGATTGAAGAATCAACAAGACACTTCCACCAAATCCACCATCGAAAACGCTCTCTCATCATATTCCTCCGTCGCATCCGTCACCACACCGCCTCTTTTGACGTCAGAGCCAACCGTTGTTTCGACGCCGATTTTAACAGAGATCACGTCGAGTTCTGTAACAACCGGTTCGGTTGGTTCTGTTTCTATTACGGTTCCACCGAACCGATGTTTGAGTTGTAGAAAGCGCGTGGGGTTAACCGGGTTTAAGTGTAAGTGCGGGTCGATGTTTTGTGGGACCCATAGGTACCCGGAGAGACACGGGTGTGGGTTTGATTTTAAGACGGTGGGGAGAGAGGAAATAGCGCGAGCGAACCCTTTGATAAGAGCGGAGAAACTACAGAGGATTTGA 507 0.5049 MAEEQPCQAPEGHRLCANNCGILGNPATMNLCSKCYGDIRLKNQQDTSTKSTIENALSSYSSVASVTTPPLLTSEPTVVSTPILTEITSSSVTTGSVGSVSITVPPNRCLSCRKRVGLTGFKCKCGSMFCGTHRYPERHGCGFDFKTVGREEIARANPLIRAEKLQRI* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1856 168 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Psa6g1856 168 Gene3D - 88 164 IPR035896 -
Psa6g1856 168 PANTHER BNAC06G14100D PROTEIN 1 168 - -
Psa6g1856 168 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Psa6g1856 168 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 168 - -
Psa6g1856 168 Pfam AN1-like Zinc finger 111 145 IPR000058 GO:0008270
Psa6g1856 168 ProSiteProfiles Zinc finger AN1-type profile. 103 149 IPR000058 GO:0008270
Psa6g1856 168 SMART AN1_Zf_4 109 146 IPR000058 GO:0008270
Psa6g1856 168 SUPERFAMILY AN1-like Zinc finger 103 163 IPR035896 -
Psa6g1856 168 Pfam A20-like zinc finger 14 36 IPR002653 GO:0003677|GO:0008270
Psa6g1856 168 Gene3D - 1 62 - -
Psa6g1856 168 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1856 Psa-Chr6 112156646 112158121 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1856 1 168 C2H2 Transcription Factor Family AT3G52800 52.353 7.02e-52 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1856 - - lang:109347531 231.106