Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1823 ATGGCAATGCATATGTTGGCTATAAGTCCTTTCCTTTCTTTGATTTCAGCCATGGTTGTTCCTTGTATGGTTCTAGTTGTCGCCTTTCTTGGTCAAGAACTTCGCAAGATATCTAAAAAGGCACATCTTAGTGTTGCTGCTCTATCAGCATATCTAAATGAGATGCTGCCCGCGATTCTCTTTGTGAAAGCAAACAATGCGGAGTTGCTTGAGAGTGCCAGGTTTAGGAGACTGGCCCTGATTGACAATTCTGCAAAGTTGAACAAAAAAAGGATGAAAGCAGTCATTCCCCAGGTTATACAGGCTGTTTACTTTGGAGTTCTTTCCATACTTTGTGCAGGTTCGGTGGTTATTTCAAAAGGTTCATTTGATCGCTATAGCTTGGTTTCATTCGTGACTTCATTGCTTTTCTTGATCGAGCCTATTCAGGATGTAGGAAAAGCTTACAATGAATGGAGGCAGGGAGAACCAGCTATTGAACGCCTCTTTGCTATGACCAGGTTCAAAAATAAGGTAGTTGAGAAACCAGATGCTGTTGATTTGGACCATGTTACAGGGGACCTGAAATTTTGTGATGTATCCTTTAAGTATAATGATGGCTTGCCTTTAATCTTAAATGGATTGAATCTTCACGTTCGGACAGGAGAGATAGTTGCTATCGTAGGTCCATCTGGGGGAGGGAAAACAACACTTGCGAAACTGTTGCTTCGGCTTTACGATCCTATATCTGGTTCTATACTGATTGATAACCAAAACATCCAAGACATTCATTTGCGAAGTTTAAGAAGACACATCGGTGTAGTTTCTCAAGATATAACACTTTTTTCAGGTACAGTTGCTGAAAACATTGCTTATAGGGATCTGACAACAAAAATCGACATGGAGAGAGTGAAACGGGTAGCTCAAACTGCTTATGCAGATGAGTTCATTAGAAAACTTCCAGAAGGTTACAAAACCAATATTGGACCAAGGGGCTCAACTTTAAGTGGAGGCCAGAGGCAAAGGCTGGCTATTGCAAGGGCTTTCTATCAAAACTCTTCTATTTTAATTCTCGACGAGGCAACTTCTGCCTTAGATAGTAAATCTGAGTTATTAGTGAGGCAAGCTGTGGAGCGATTAATGGAGAATCGCACGGTGCTTGTGATTTCGCATCGCTTGGAAACCGTTATGATGGCGAAAAGAATATTCCTTTTGGATGATGAAAAGCTGGAAGAGCTGCCTCGATCAACTATATTGAACGGTCACATGGATTCATTGCTATCATCTGGGCTTATTGTTTGA 1281 0.4122 MAMHMLAISPFLSLISAMVVPCMVLVVAFLGQELRKISKKAHLSVAALSAYLNEMLPAILFVKANNAELLESARFRRLALIDNSAKLNKKRMKAVIPQVIQAVYFGVLSILCAGSVVISKGSFDRYSLVSFVTSLLFLIEPIQDVGKAYNEWRQGEPAIERLFAMTRFKNKVVEKPDAVDLDHVTGDLKFCDVSFKYNDGLPLILNGLNLHVRTGEIVAIVGPSGGGKTTLAKLLLRLYDPISGSILIDNQNIQDIHLRSLRRHIGVVSQDITLFSGTVAENIAYRDLTTKIDMERVKRVAQTAYADEFIRKLPEGYKTNIGPRGSTLSGGQRQRLAIARAFYQNSSILILDEATSALDSKSELLVRQAVERLMENRTVLVISHRLETVMMAKRIFLLDDEKLEELPRSTILNGHMDSLLSSGLIV* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1823 426 ProSitePatterns ABC transporters family signature. 328 342 IPR017871 GO:0005524
Psa6g1823 426 PANTHER ABC TRANSPORTER B FAMILY MEMBER 29, CHLOROPLASTIC 1 416 - -
Psa6g1823 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 405 IPR027417 -
Psa6g1823 426 Pfam ABC transporter transmembrane region 5 141 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g1823 426 SMART AAA_5 214 402 IPR003593 -
Psa6g1823 426 Pfam ABC transporter 205 356 IPR003439 GO:0005524
Psa6g1823 426 Gene3D - 186 402 IPR027417 -
Psa6g1823 426 Gene3D ABC transporter type 1, transmembrane domain 8 185 IPR036640 GO:0005524|GO:0016021
Psa6g1823 426 SUPERFAMILY ABC transporter transmembrane region 4 166 IPR036640 GO:0005524|GO:0016021
Psa6g1823 426 CDD ABC_6TM_exporters 5 162 - -
Psa6g1823 426 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 1 416 IPR039421 -
Psa6g1823 426 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 188 425 IPR003439 GO:0005524
Psa6g1823 426 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 5 154 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1823 Psa-Chr6 107652277 107656875 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1823 178 423 Calmodulin-binding Proteins AT2G36910 44.758 4.21e-56 198