Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1820 ATGAATAAAAGAAAAGATGGAAGGAAGAAGTTCCATGAGACACGACACCCAATATACAAAGGAGTGAGACAAAGAAACGGAAAATGGGTGTGTGAGTTACGACATCCTAACAACAAAACTCGTCGTGTTTGGCTTGGAACATTTTCTCACCCCGACATGGCAGCTAAAGCTTATGATGTTGCAGCTTTAGCTTTTAGAGGTGAAGCTGCTTGCTTAAATTTCCCTAACTCGGCTACTTCTTTGCCGCGTCTTGATTCACAAACTTCTTCGATTAGGTCGATTCAGTTTGCCGCGATGAAAGTGGGTGAAAAACATTTCTTGTTGTGCGAGGACTCTGAGCCATTCTCTGCTGAGACGGCTGAGAATGATTCAGAGTCGTTAGGTTGTGTTTGTGATATTAATGTTTGCATGGAGGGAGATTCTGGGAGGTTGTTTTGGGATGAGGAGGAGGTTTTCAATATGCCGGGTTTGATAAACAGTATGGCGGAAGGGTTGGTTATGACACCACCGGCGTTGCAGAGAGGGTTCAATTGGGTTGGTGGGGAAACTACCATGGACTTGACTCTATGGAAAAATTGA 579 0.4421 MNKRKDGRKKFHETRHPIYKGVRQRNGKWVCELRHPNNKTRRVWLGTFSHPDMAAKAYDVAALAFRGEAACLNFPNSATSLPRLDSQTSSIRSIQFAAMKVGEKHFLLCEDSEPFSAETAENDSESLGCVCDINVCMEGDSGRLFWDEEEVFNMPGLINSMAEGLVMTPPALQRGFNWVGGETTMDLTLWKN* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1820 192 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Psa6g1820 192 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
Psa6g1820 192 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Psa6g1820 192 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Psa6g1820 192 PRINTS Ethylene responsive element binding protein signature 57 77 IPR001471 GO:0003700|GO:0006355
Psa6g1820 192 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 7 191 - -
Psa6g1820 192 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 191 - -
Psa6g1820 192 CDD AP2 17 77 IPR001471 GO:0003700|GO:0006355
Psa6g1820 192 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Psa6g1820 192 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1820 Psa-Chr6 107239401 107239979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1820 3 190 AP2-EREBP Transcription Factor Family AT4G25490 44.845 4.14e-43 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa6g1820 AP2 5.2e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1820 6 107239401 107239979 Psa6g1820 6 107239401 107239979 ECH