Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1819 ATGGAAGACCACCATAACAATCATGCTCACCACCAACAACAATACAACGGCATGTCAACTGATCTAAGACAACTAGTTAACGGACCAAGGCCAACCCATTTCACTTCAATACCATCCTCCGACGAGTTTTTCACCGGTCACCGGAATCTCACAGCTTTATTAACCACACCACATCAAAACGACCAACAACATCACTACGAGATGATGATGTTGGCTCGTGGTGTTAATGTTCTTGAAGACTTCAATAACATCACCAATCATGTTCAACCACCTCCTCCTCCAACAACAGCCACAACCACCACCGCTAGTGTTTCCACTCCTGAAACCACCGGATGCATCGCCGGAGACGCTTCCACCGGAAGATGGCCCAGACAAGAAACTCTTACTCTTCTCGAAATCAGATCTCGTCTTGACCCTAAATTTAAAGAAGCTAATCAAAAGGGTCCCTTATGGGATGAAGTTTCTAGGATAATGTGCGAAGAACATGGATATCAAAGGAATGGAAAAAAGTGCAGGGAGAAATTTGAGAATCTATACAAATATTACAAGAAGACAAAAGAAGGTAAAGCAGGAAGGCATGATGGTAAGAATTACAGATTCTTTCGTCAACTTGAAGCTTTATACGGTGAAAACAGTAACCAAACTTCTCTACCAGAAACCAATTTTGTCAACAACTTCAATTTTCAAAACCCTTCAAAAACTACAAACCAAGAGGTTTTTAATAATAATGATCATAGCTTGAGTCTCACTACTAACTCAACTGACTTTGAGATCGATACTTCGTCGTCGGATGATGAGAAGGGAAAGAGGAAGAGTAGTGGAAGGAGGAGTTGGAAGGTGAAGATAAGAGAGTTCATTGATTCACAAATGAAGAAGCTTGTGGATAAGCAAGAGGAGTGGTTGAGTAAACTTGTGAAGACACTTGAGGATAAGGAAAAGGAGAGGGTTTTGAGAGAGGAAGAGTGGAGGACACAAGAAGCGAAAAGGGTAGAAAAGGAACAAAAGTTTTGGAGTAAAGAGAGAGCATGGATTGAAGCAAGGGATGCTGCTTTAATGGAAGCTTTGAAGAATATAGGTGGAAGAGAAATGAAAGTTGAACTTGAAGGTCATAATCATAAGGGTATAAATGTAATAACAGAGGGTGAGATTCATCAAAGCAACATTGAAAACCAAAATGAAGATGGGAGTGAAATATTGAATAGTACTGTGAGAGGTACTGATAATAACTATCAAAGGGATTCTTTATCTTTACAAGAAGGAAACAAGAAGAGAAAGGAGAATTTTTACTTCAACAATAATGAACAATGTTCTATGTACAATCAAGGTAGTGGTTATATTGATGTTAATCATCAAAGAGAGGAGATTGTGAAGCTACAAAGGAATGTTGATCATGGTTCTTCACCTTCCGATTCTAATGTCGGTAATGTTGCTAATGCCGATGCTTGCTTTCCCTTCTTGATTAATGAAGGTGGAAGTTTGTGGGAGAATTTCGGCTTGAAGATCAATAAAACAAACCAAAACAACTGA 1527 0.3929 MEDHHNNHAHHQQQYNGMSTDLRQLVNGPRPTHFTSIPSSDEFFTGHRNLTALLTTPHQNDQQHHYEMMMLARGVNVLEDFNNITNHVQPPPPPTTATTTTASVSTPETTGCIAGDASTGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMCEEHGYQRNGKKCREKFENLYKYYKKTKEGKAGRHDGKNYRFFRQLEALYGENSNQTSLPETNFVNNFNFQNPSKTTNQEVFNNNDHSLSLTTNSTDFEIDTSSSDDEKGKRKSSGRRSWKVKIREFIDSQMKKLVDKQEEWLSKLVKTLEDKEKERVLREEEWRTQEAKRVEKEQKFWSKERAWIEARDAALMEALKNIGGREMKVELEGHNHKGINVITEGEIHQSNIENQNEDGSEILNSTVRGTDNNYQRDSLSLQEGNKKRKENFYFNNNEQCSMYNQGSGYIDVNHQREEIVKLQRNVDHGSSPSDSNVGNVANADACFPFLINEGGSLWENFGLKINKTNQNN* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1819 508 PANTHER - 33 405 - -
Psa6g1819 508 PANTHER - 417 492 - -
Psa6g1819 508 Pfam Myb/SANT-like DNA-binding domain 121 207 IPR044822 -
Psa6g1819 508 MobiDBLite consensus disorder prediction 98 113 - -
Psa6g1819 508 MobiDBLite consensus disorder prediction 89 118 - -
Psa6g1819 508 Gene3D - 122 184 - -
Psa6g1819 508 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 33 405 - -
Psa6g1819 508 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 417 492 - -
Psa6g1819 508 ProSiteProfiles Myb-like domain profile. 114 179 IPR001005 -
Psa6g1819 508 CDD GT1 121 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1819 Psa-Chr6 106635724 106639806 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1819 121 503 Trihelix Transcription Factor Family AT5G03680 43.424 9.02e-100 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Psa6g1819 Myb_DNA-bind_4 1.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1819 - - mtr:MTR_1g060990 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1819 6 106635724 106639806 Psa6g1819 6 106635724 106639806 ECH