Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1800 ATGGAACAAACTATGAACAACAATACCAATGTTTCTTCACCTCAACGAGTACTAACAGTAACAAACCCATTACCTCAAATCATGAACATGAATGTCGGAAACAGTGTTAGTGGTGTTAATACTACTGGAACATCAATGGTGGTTTCTACGGTAGCAGTGTCAACAACAACGACGACGATGACGCCAGGAAGCAGTGGTGGAGGAAGCTTTGATTTGTTTGGGAAGAAGAAAAGAGGTAGACCAAGAAAATATGATGCTGATGGAAACCTAAATCCTAATTACAAGAAGATTGAAAAAACACCAACAACAACAACACCATTGTTACCACCACCACCTGGATTCACTTTGTCATCTAATGAGTTTTCCTCCAAAAAGGGCCGTGGGAAACCAACTGGGTTTGGAAATTACCAAATCCTTTCTTCTTTTGGTGAAGTGTTTGCAAGCACAGCTGCTGTGGATTTTACACCGCATGTGGTTACTGTTTATACCGGAGAGGATGTTGGTGGGAAGATCTTGTCATTTGCGCAGAAGAGTCCAAGAGCGATATGCATTCTTTCTGCCAATGGAGCTATCTCTAAAGTCACACTACGTCAACTCGGTTCTTCCGGTGGTGGTATTTTGACTTATGAGGGTCGGTTTGAGATCTTGTCTTTGTCTGGATCATATACGGTCTCAGACACTAGCGGCATAAGAACTCGCGATGGTGGATTGAGTGTCTCACTTGCTGGTCCCGACGGCCGAGTGATCGGAGGTTCTGTTGCTGGTCTACTTACAGCTGCTGGTCCTATCCAAATTGTAGTTGGAAGTTTCACGCCAGATGGTAACAAGACGCTTAAAAAGAAGTACCAACGGGAACAAACGGTGTCGTCTCCAACATCAACTGGTCCAGAAATCCTGACAGCAGCAAGACCTATCTCACAAGCAAATGCTCATGCTGAAAACTTCATGATACCGATTTTGTCTCAGTTACCCGATCATCAAAACCAGAGAGAATCTGTCAGTGTTTCAAGCGATAAACTGAACTTAGATGACACACCCGATGCTGCTACTTGGACCGGTTCCGATGAGTATTCAGATCAAAGAACATCTCCTGATATCAACATTTCTTTGCCTGATGAATAG 1122 0.4358 MEQTMNNNTNVSSPQRVLTVTNPLPQIMNMNVGNSVSGVNTTGTSMVVSTVAVSTTTTTMTPGSSGGGSFDLFGKKKRGRPRKYDADGNLNPNYKKIEKTPTTTTPLLPPPPGFTLSSNEFSSKKGRGKPTGFGNYQILSSFGEVFASTAAVDFTPHVVTVYTGEDVGGKILSFAQKSPRAICILSANGAISKVTLRQLGSSGGGILTYEGRFEILSLSGSYTVSDTSGIRTRDGGLSVSLAGPDGRVIGGSVAGLLTAAGPIQIVVGSFTPDGNKTLKKKYQREQTVSSPTSTGPEILTAARPISQANAHAENFMIPILSQLPDHQNQRESVSVSSDKLNLDDTPDAATWTGSDEYSDQRTSPDINISLPDE* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1800 373 Gene3D - 156 290 - -
Psa6g1800 373 CDD DUF296 155 270 IPR005175 -
Psa6g1800 373 Pfam Plants and Prokaryotes Conserved (PCC) domain 156 271 IPR005175 -
Psa6g1800 373 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 4 372 - -
Psa6g1800 373 ProSiteProfiles PPC domain profile profile. 151 294 IPR005175 -
Psa6g1800 373 MobiDBLite consensus disorder prediction 327 373 - -
Psa6g1800 373 MobiDBLite consensus disorder prediction 327 367 - -
Psa6g1800 373 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 4 372 IPR039605 GO:0003680
Psa6g1800 373 SUPERFAMILY AF0104/ALDC/Ptd012-like 153 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1800 Psa-Chr6 104687785 104690720 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1800 75 341 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 48.561 6.77e-65 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1800 - - gmx:100779227 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1800 6 104687785 104690720 Psa6g1800 6 104687785 104690720 ECH