Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1786 ATGTGCACAATAACTTCTGCAAAAGTTATGCGAGATGACAAAGGAAAAAAGCAAAGGGTTGGGTTTGTCTGTTTCTCAACCCTGGATGAGGCGGTTAAGGCTGTAAACAGTTTTCATGGGCGCATGTTCCATGGAAAACCACTGTATGTTGCTTTGCTCAGAGAGAAAGATGTTAGGACAGGGCCTATTGCAGCTCCAGCATACTCAAAAACCATCCGGATTAGCTGGACCTTCCGCTGCTGTTACCCCGGTGCACTTTCTCCTTATCATCCACACCGGTGTTGTTTATCATTACCCTATGGGTTACTAAACGTTTATCAGAGACCCATGTTTCTGGCCAGGAAGTACTTCATTCAGATTCTATTCAGCCAAGGTTTCTGTCATCTGAATATACTTCAACACCAAGAGATGATACCCCTCTTAATAGGCGTAAGCTTGTAG 441 0.4422 MCTITSAKVMRDDKGKKQRVGFVCFSTLDEAVKAVNSFHGRMFHGKPLYVALLREKDVRTGPIAAPAYSKTIRISWTFRCCYPGALSPYHPHRCCLSLPYGLLNVYQRPMFLARKYFIQILFSQGFCHLNILQHQEMIPLLIGVSL* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1786 146 SUPERFAMILY RNA-binding domain, RBD 3 59 IPR035979 GO:0003676
Psa6g1786 146 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 55 IPR000504 GO:0003723
Psa6g1786 146 PANTHER RNA BINDING PROTEIN 3 60 - -
Psa6g1786 146 PANTHER POLYADENYLATE-BINDING PROTEIN 3 60 - -
Psa6g1786 146 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 48 IPR000504 GO:0003723
Psa6g1786 146 Gene3D - 1 53 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1786 Psa-Chr6 103757611 103758336 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1786 3 59 Eukaryotic Initiation Factors Gene Family AT2G36660 63.158 1.04e-19 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1786 K13126 - gmx:100779547 90.1225