Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1785 ATGACGGATTCTCAGAAGGTGCCGGCTGCGACGGCCTCACTTTTCGTCGGCGAACTTCACTCCGACGTAACCACAGATCAACTCTATGCGGCATTTTCTGAATTTAAGAGTCTCGTTTCCGTTCACATCTGTAAAGACTCAGCCACAGGGAAGTCCCTCTGTTACGGTTACGTCAACCTCACCTCTCGTCAAGAAGCAATTTCTGCTATTGAGCTGAAGAACAATTCTTTACTCAATGGAAAAGCGATAAGGGTCATGTGGTCAAGTTGTGATGTGAGGAAAAGTGGCAAAGGGAATGTGTTTGTTAAGAACTTAGCAGAATCCATAGATAATGTGGGACTACATGATTTATTTCAAGAATATGGGAATATTTTGTCTAGCAAAATTGTCATGTCTGAAGATGGGAAGAGCAAAGGGTTTGGTTATATCCAGTTTGATTCAGAGGAGTCTGCAAATGATGCTATCCAGAAAATGAATGGCTCTACTGTGAGAGATAAGCAGATATATGTTGGGAAATTTATCAGAAAAAGTGAGCGCTCTTATGGTGACTCTGATGCCCAATATACAAACTTGTATGTTAAGAATTTGGACCCACATGTTACCGAAGCACTTCTTAAAGAAAAATTCTCCTCTTTTGGAAAAATTATTAGCTTGGCTATTGCAAAGGATGAGAAGGGGTTGTCAAAAGGTTTTGGATTTATGAACTATGAAAACCCGGATGATGCAAGACGAGCAACGGAAGCAATGAATGGATCACAATTTGGTTCAAAGAACTTGTATGTTGCAAGGGCACAAAAAAAGGTTGAACGTGAGAAGATCTTGCAGCAGTGGTTTGTGGAAAGATGCATGGAGAAAAACATGAAATACAAGGGATCAAACATTTATGTGAAGAACATTAATGATAGTGTTAGTGACGAAAAACTAAGGGGTCAGTTTAGTGCATGTGGCACAATAACTTCTGCAAAAGTTATGCGAGATGACAAAGGAAAAAGCAAAGGGTTTGGGTTTGTCTGTTTCTCAACCCTGGATGAGGCGGTTAAGGCTGTAAACAGTTTTCATGGGCGCATGTTCCATGGAAAACCACTGTATGTTGCTTTTGCTCAGAGGAAAGATGTTAGGCAAGGCCTATTGCAGCTCCAGCATACTCAAAAACCATCCGGATTAGCTGGACCTTCCGCTGCTGTTACCCCCGGTGCACTTTCTCCTATCATCCACACCGGTGTTGTTTATCATCACCCTATGGGTTCTACAACGTTTTATCAGAGGACCCATGTTTCTGGCCAGGAAGTACTTCATTCAGATTCTATTTCAGCCAAGGTTTCTGTCATCTGA 1332 0.4174 MTDSQKVPAATASLFVGELHSDVTTDQLYAAFSEFKSLVSVHICKDSATGKSLCYGYVNLTSRQEAISAIELKNNSLLNGKAIRVMWSSCDVRKSGKGNVFVKNLAESIDNVGLHDLFQEYGNILSSKIVMSEDGKSKGFGYIQFDSEESANDAIQKMNGSTVRDKQIYVGKFIRKSERSYGDSDAQYTNLYVKNLDPHVTEALLKEKFSSFGKIISLAIAKDEKGLSKGFGFMNYENPDDARRATEAMNGSQFGSKNLYVARAQKKVEREKILQQWFVERCMEKNMKYKGSNIYVKNINDSVSDEKLRGQFSACGTITSAKVMRDDKGKSKGFGFVCFSTLDEAVKAVNSFHGRMFHGKPLYVAFAQRKDVRQGLLQLQHTQKPSGLAGPSAAVTPGALSPIIHTGVVYHHPMGSTTFYQRTHVSGQEVLHSDSISAKVSVI* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1785 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 266 IPR000504 GO:0003723
Psa6g1785 443 SMART rrm2_1 99 171 IPR003954 GO:0003676
Psa6g1785 443 SMART rrm2_1 190 262 IPR003954 GO:0003676
Psa6g1785 443 SMART rrm2_1 293 365 IPR003954 GO:0003676
Psa6g1785 443 PANTHER RNA BINDING PROTEIN 5 421 - -
Psa6g1785 443 CDD RRM2_I_PABPs 96 172 IPR045305 -
Psa6g1785 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 259 IPR000504 GO:0003723
Psa6g1785 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Psa6g1785 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 168 IPR000504 GO:0003723
Psa6g1785 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 362 IPR000504 GO:0003723
Psa6g1785 443 SUPERFAMILY RNA-binding domain, RBD 187 373 IPR035979 GO:0003676
Psa6g1785 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Psa6g1785 443 Gene3D - 1 99 IPR012677 -
Psa6g1785 443 SUPERFAMILY RNA-binding domain, RBD 12 179 IPR035979 GO:0003676
Psa6g1785 443 Gene3D - 280 378 IPR012677 -
Psa6g1785 443 PANTHER POLYADENYLATE-BINDING PROTEIN 5 421 - -
Psa6g1785 443 Gene3D - 172 279 IPR012677 -
Psa6g1785 443 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 12 400 IPR006515 GO:0003723
Psa6g1785 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 369 IPR000504 GO:0003723
Psa6g1785 443 Gene3D - 100 171 IPR012677 -
Psa6g1785 443 SMART rrm1_1 13 86 IPR000504 GO:0003723
Psa6g1785 443 SMART rrm1_1 190 262 IPR000504 GO:0003723
Psa6g1785 443 SMART rrm1_1 99 171 IPR000504 GO:0003723
Psa6g1785 443 SMART rrm1_1 293 365 IPR000504 GO:0003723
Psa6g1785 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 175 IPR000504 GO:0003723
Psa6g1785 443 CDD RRM4_I_PABPs 291 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1785 Psa-Chr6 103748960 103751801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1785 11 414 Eukaryotic Initiation Factors Gene Family AT2G36660 57.524 7.22e-170 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1785 K13126 - gmx:100804671 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1785 6 103748960 103751801 Psa6g1785 6 103748960 103751801 ECH