Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1747 ATGCAACTCTTACAAGAACAACAACTCATGCTGGTTTCTAAGGATCTTACACAACAACAAATTATAAAAGGAAAGAGAACAAAGCGTCAAAGGTTGCCTTCTCCACTTCGGTTAGCCATGTCTTGCAATGAAGGAACGAGCAATTACGATCACGATCACAATCACAACGAGAGAAATTCAAAAGGAATTGACTTCACGATAATAAAATCGCGTCACCGATCAGAAGAAGAGAAAGAAGAAGAAGATATGGCGAATTGTCTTATTCTATTAGCTCAAGGTCGTCATCATCATCGTCGGGATCATAATCCTGACGACGACAACAAAAGATCTTCGAATTTTTATCTTTACCAATGCAAGACATGCAATAGGTGTTTCCCTTCATTCCAAGCACTTGGTGGACATAGAGCAAGTCATAGCAAACCTAACAAACCAAATTGCAACAACAATGTTACAAGAACTTTTGTTGATGATCATTATGATCCAACCATGAATACTATACTCTCTTTGCAAGCCTATACGGCCGCGACCCCGATTACTACTATTACTACTACTACTAATGCTGCAACGAAAAAGTCGAAAATTCACGAGTGTTCGATATGTGGCGCTGAATTCTCGTCGGGGCAAGCATTGGGAGGACATATGCGACGACATAGAACACTCGTGAATACGTCAACAACAACGACGACAGCGGCAACAACTTCTTTGAGTATGAGTATTGGTAGCCCTAAATCTCATGAAGCTAAGAAGCCAAGAAATGTTTTGAAGTTGGATTTGAATCTTCCAGCTCCAGAAGTTGAACAAAGAGATCAATCCAAGTTTTCTTTTCAGCCTAGAGAAAATGTTATTGCTTTCTCTAGTAATTCTTCTTTGGTGGATTGCCATTTCTAA 888 0.3964 MQLLQEQQLMLVSKDLTQQQIIKGKRTKRQRLPSPLRLAMSCNEGTSNYDHDHNHNERNSKGIDFTIIKSRHRSEEEKEEEDMANCLILLAQGRHHHRRDHNPDDDNKRSSNFYLYQCKTCNRCFPSFQALGGHRASHSKPNKPNCNNNVTRTFVDDHYDPTMNTILSLQAYTAATPITTITTTTNAATKKSKIHECSICGAEFSSGQALGGHMRRHRTLVNTSTTTTTAATTSLSMSIGSPKSHEAKKPRNVLKLDLNLPAPEVEQRDQSKFSFQPRENVIAFSSNSSLVDCHF* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1747 295 SUPERFAMILY beta-beta-alpha zinc fingers 115 217 IPR036236 -
Psa6g1747 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 116 143 IPR013087 -
Psa6g1747 295 ProSitePatterns Zinc finger C2H2 type domain signature. 118 138 IPR013087 -
Psa6g1747 295 PANTHER ZINC FINGER, C2H2-LIKE PROTEIN-RELATED 18 295 - -
Psa6g1747 295 PANTHER ZINC FINGER PROTEIN ZAT5 18 295 - -
Psa6g1747 295 Pfam C2H2-type zinc finger 116 141 - -
Psa6g1747 295 Pfam C2H2-type zinc finger 195 218 - -
Psa6g1747 295 Gene3D Classic Zinc Finger 113 217 - -
Psa6g1747 295 ProSitePatterns Zinc finger C2H2 type domain signature. 197 217 IPR013087 -
Psa6g1747 295 SMART c2h2final6 195 217 IPR013087 -
Psa6g1747 295 SMART c2h2final6 116 138 IPR013087 -
Psa6g1747 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 195 217 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1747 Psa-Chr6 99817078 99818659 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1747 21 294 C2H2 Transcription Factor Family AT5G03510 38.514 4.44e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa6g1747 zf-C2H2_6 2.4e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1747 - - mtr:MTR_1g062780 378.637