Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1746 ATGACCCAAACAATCTGCATTTTCTTATTCTCACTTCTTGCTTCCTTTTTCACCCATGGAACTTCCATGCTCAACCTCACCCTCTCAGCTCAACACCCAGACCCTGAATCTGTTGCCATAGAAGTTCACAGGAAAGTGAATGAATCAATGAGAAGAAGAGAAATGCTATCAATATCAAGCAAGGATTTTTCATCATCCTGTGAAACAGGAAACCCGATAGACGATTGTTGGAAATGCGACAAAGATTGGTCCAACAATCGTCAAAGGTTAGCAGATTGCGCAATTGGGTTTGGCCAAAACGCCAAAGGAGGAAAAGGTGGTAAATTCTACATTGTAACAGACTCCTCAGACAATGATCCTGTGAATCCAAAACCTGGTACACTAAGATACGCTGTTATACAGAATGAGCCATTGTGGATTGTTTTTCCAAGTAACATGATGATTGAGTTGTGTCAAGAGCTTATTTTTAACAGCTTTAAAACCGTTGATGGACGTGGTGCTGATGTTCATATTGTGGGTGGTGGGTGCATTACTCTTCAGTATATTAGTAATGTTATTATACATAACATTCATGTTCATCATTGTCATCCATCTGGTAACACTAACGTGCGGTCGAGTCCAGAACACTACGGATATAGAACAATATCAGACGGAGATGGAATCTCTATATTCGGATCAAGGAACCGATATACGGCTCCTGAGGATGTTGATGCGAAGCAAGTGACGAAGAGGTTGGATTCGGGTGAAGGGGAATGGACGACATGGAATTGGAAATCGGAAGGTGATTTTATGGTGAATGGTGCATTTTTTGTTGATTCAGGTAGTGAGAGTGAAGGGAATTTTCAGAAGGCTTATAGCATTGATCCTAAAACGGTTGATCGGATTTCTGTTCTTACTATGTCCGCGGGCGTTCTTGGTGTTGCTAGGGACAACAATCTAGGAATGTGGACAAGAGCACCAAACGGTGGTGGTGATTATAGTATTTCATATTCCGGAGAACAAGAGTACACTGATGACATGTCCCACAGTACGATGATGTTGACCCATTCCTTTACTTTGACTCTTGTATCTCTTTTTGTTGCACTCTTGTGTTTGTTGTCTCATGCTGCTCCCATTCTATCCTAA 1125 0.416 MTQTICIFLFSLLASFFTHGTSMLNLTLSAQHPDPESVAIEVHRKVNESMRRREMLSISSKDFSSSCETGNPIDDCWKCDKDWSNNRQRLADCAIGFGQNAKGGKGGKFYIVTDSSDNDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIELCQELIFNSFKTVDGRGADVHIVGGGCITLQYISNVIIHNIHVHHCHPSGNTNVRSSPEHYGYRTISDGDGISIFGSRNRYTAPEDVDAKQVTKRLDSGEGEWTTWNWKSEGDFMVNGAFFVDSGSESEGNFQKAYSIDPKTVDRISVLTMSAGVLGVARDNNLGMWTRAPNGGGDYSISYSGEQEYTDDMSHSTMMLTHSFTLTLVSLFVALLCLLSHAAPILS* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1746 374 Gene3D - 70 227 IPR012334 -
Psa6g1746 374 Gene3D - 228 306 IPR012334 -
Psa6g1746 374 SUPERFAMILY Pectin lyase-like 62 228 IPR011050 -
Psa6g1746 374 SMART amb_all 145 342 IPR002022 -
Psa6g1746 374 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Psa6g1746 374 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Psa6g1746 374 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Psa6g1746 374 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Psa6g1746 374 SUPERFAMILY Pectin lyase-like 228 304 IPR011050 -
Psa6g1746 374 PANTHER PECTATE LYASE 1 227 - -
Psa6g1746 374 PANTHER PECTATE LYASE 228 329 - -
Psa6g1746 374 PANTHER PECTATE LYASE 18-RELATED 1 227 IPR045032 GO:0030570
Psa6g1746 374 PANTHER PECTATE LYASE 18-RELATED 228 329 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1746 Psa-Chr6 99722479 99724738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1746 228 367 Polysaccharide Lyase AT3G53190 47.552 1.59e-31 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1746 K01728 - gmx:100815062 390.963