Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1745 ATGGCGGTTCCTGGGCGGCGCAATGGTTTCAACGAAGACGATGATGAAGAATCCAACGGTATTTTCGAAGAGCAGTCTCTCGTTGTTGAAGAAACCGATACTCCTCCTCATCTCCGGGACCTCTCCCATGCCGCCCAAACCGGCGACCTCAACGCCCTCCGCCTCGCTCTCGATAACTTGAGTGGTAGTATTGATGAACCTTTGGAGGATGGGGATAGCGCTCTTCATTTGACCTGTTTGTACGGCCATTTTGGATGCGCCCAGCTTCTACTAGAAAGAGGAGCTGATTTGGAGGCTAAGGATGAGGATGGAGCAATTCCTTTACACGATGCGTGTGCAGGAGGGTTTTTGGAGATAGTCCAACTTCTACTTAACAGAGCTAATGACGCCGAGCATATAAAAAGAATGTTAGAATCAGTCGATTCTGAGGGTGATACTCCTCTTCATCATGCTGCAAGAGGTGAGCATGCTGATGTAATTAGGTTGTTGCTTTCTAATGGTGCATCAGCCACAAAGGAAAACTTATATGGAAAGACCCCTGCAGAGTTACCTGAACACGGCACAGATGCTAGGAGGCTGCTTGAAGCTGCTACTACTGCCATGGCAACCTAA 612 0.4869 MAVPGRRNGFNEDDDEESNGIFEEQSLVVEETDTPPHLRDLSHAAQTGDLNALRLALDNLSGSIDEPLEDGDSALHLTCLYGHFGCAQLLLERGADLEAKDEDGAIPLHDACAGGFLEIVQLLLNRANDAEHIKRMLESVDSEGDTPLHHAARGEHADVIRLLLSNGASATKENLYGKTPAELPEHGTDARRLLEAATTAMAT* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1745 203 ProSiteProfiles Ankyrin repeat profile. 103 135 IPR002110 GO:0005515
Psa6g1745 203 SMART ANK_2a 103 132 IPR002110 GO:0005515
Psa6g1745 203 SMART ANK_2a 70 99 IPR002110 GO:0005515
Psa6g1745 203 SMART ANK_2a 143 172 IPR002110 GO:0005515
Psa6g1745 203 MobiDBLite consensus disorder prediction 1 20 - -
Psa6g1745 203 PANTHER SOWAH (DROSOPHILA) HOMOLOG 1 199 - -
Psa6g1745 203 ProSiteProfiles Ankyrin repeat region circular profile. 143 174 - -
Psa6g1745 203 Pfam Ankyrin repeats (3 copies) 41 101 IPR002110 GO:0005515
Psa6g1745 203 Pfam Ankyrin repeats (3 copies) 103 172 IPR002110 GO:0005515
Psa6g1745 203 ProSiteProfiles Ankyrin repeat region circular profile. 70 102 - -
Psa6g1745 203 Gene3D - 35 202 IPR036770 -
Psa6g1745 203 ProSiteProfiles Ankyrin repeat profile. 70 102 IPR002110 GO:0005515
Psa6g1745 203 SUPERFAMILY Ankyrin repeat 41 182 IPR036770 -
Psa6g1745 203 ProSiteProfiles Ankyrin repeat profile. 143 175 IPR002110 GO:0005515
Psa6g1745 203 PANTHER TANKYRASE-LIKE 1 199 - -
Psa6g1745 203 ProSiteProfiles Ankyrin repeat region circular profile. 103 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1745 Psa-Chr6 99702449 99704637 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1745 41 186 Ion Channels AT2G25600 30.588 1.13e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1745 - - gmx:100527544 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1745 6 99702449 99704637 Psa6g1745 6 99702449 99704637 ECH