Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1732 ATGCAAGGAGAAAATTTGCATAAGGGAACTTGGCTTCAAGAGGAAGATGAACAGTTGATTAGCTTTGTGACTCGTCTTGGGGAACGAAGATGGGATTCCCTTGCCAAAGTAGCTGGGCTTAGGAGAAGTGGTAAAAGCTGTAGGTTACGGTGGTTGAACTATCTTCGTCCAAATCTTAAGCATGGCCCTTTTAGTGTTGAAGAAGAGAGACTGATTGTTCAGCTTCAACTGCAATGGGGTAACAAGTGGTCCAAGATTGCGCGTAGGCTTCCAGGAAGAACGGATAATGAAATCAAGAATTATTGGAGAACTCGTTTACGAAAAAAAGTAGAAGTTAAACAAGAAGGTGAGTTCGTGTATAAAGTAGAAAATGCAGCTCAGCAATCCAACAAGAAAAGCATTGATGTGGTTTGCAAGAGTGGGAAAGAGACTAAGGAAAGCTCTATAGATAGTTCTTCACCTTTAACAGATTGGGGAATGAGAAATTCACCTTATCATGAAAGTAGGATATTGGATTGGATAGCAGAATTGCAAAATGGATTAGGACAAGATTGTAATAGCAACGAATCAATGTATGAATATAATCCCCATCAACATTATGATATATGGGATTGTTCAGGTTTCCTGTGGGATTTGTGA 639 0.3959 MQGENLHKGTWLQEEDEQLISFVTRLGERRWDSLAKVAGLRRSGKSCRLRWLNYLRPNLKHGPFSVEEERLIVQLQLQWGNKWSKIARRLPGRTDNEIKNYWRTRLRKKVEVKQEGEFVYKVENAAQQSNKKSIDVVCKSGKETKESSIDSSSPLTDWGMRNSPYHESRILDWIAELQNGLGQDCNSNESMYEYNPHQHYDIWDCSGFLWDL* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1732 212 Gene3D - 8 60 - -
Psa6g1732 212 SMART sant 60 108 IPR001005 -
Psa6g1732 212 SMART sant 7 57 IPR001005 -
Psa6g1732 212 SUPERFAMILY Homeodomain-like 5 102 IPR009057 -
Psa6g1732 212 CDD SANT 63 106 IPR001005 -
Psa6g1732 212 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Psa6g1732 212 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Psa6g1732 212 Pfam Myb-like DNA-binding domain 62 105 IPR001005 -
Psa6g1732 212 CDD SANT 10 55 IPR001005 -
Psa6g1732 212 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Psa6g1732 212 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Psa6g1732 212 PANTHER MYB TRANSCRIPTION FACTOR 2 212 - -
Psa6g1732 212 Gene3D - 62 136 - -
Psa6g1732 212 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Psa6g1732 212 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1732 Psa-Chr6 99101040 99103142 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1732 4 114 MYB Transcription Factor Family AT5G59780 61.261 1.94e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa6g1732 Myb_DNA-binding 7.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1732 K09422 - gmx:100783472 285.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1732 6 99101040 99103142 Psa6g1732 6 99101040 99103142 ECH