Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1699 ATGTCACAAGCTTCTGAGCAATGGAAATGGTCTGAAATGCAAGGCATTGAGTTGCTTTCATCTTCTCATACAATAACTCCAACACCAGCATTGGAGTTAGAAAGAGGAGAATCCAAGGAACAAATGGAACTGGAAGGGGAAAGTTCTTTACCCGACAACAAAAGTTGTGATTTTTCTGATGGAAATGAGAAGATTAAGAATGTTGCTTCTGTTGGGTTTGGTGAGCTTTTCAGATTTGCTGATGGGTTGGATTATATTCTCATGACAGTTGGAACTCTTGGAGCAATTGTACATGGTTGTTCATTGCCACTTTTTCTTCGGTTCTTTGCTGATCTTGTTAACTCTTTTGGTTCTAATGCTGATGATTTGGACAAGATGACCCAAGAAGTTGTTAAGTATGCGTTTTACTTTCTGATTGTTGGTGCTGCTATTTGGGCATCTTCATGGGCAGAGATTTCTTGTTGGATGTGGACGGGTGAGAGACAATCAACAAGGATGAGGATTAAGTATCTTGAAGCTGCTTTGGATCAAGATATTCAGTTCTTCGACACTGAAGTTCGAACTTCCGATGTTGTTTTTGCCATCAATGCCGATGCTGTTATGGTACAAGATGCTATAAGTGAGAAGTTAGGTAATTTTGTTCACTATATGGCTACATTTGTTTCTGGATTTGCAGTTGGTTTTAGTGCTGTTTGGCAATTAGCATTGGTTACACTTGCTGTTGTTCCTATGATAGCTGTAATAGGAGGCATTCATACTACCACTTTGGCTAAGTTATCTGGTAAAAGCCAAGAAGCTCTTTCTCAAGCTGGCAACATTGTGGAACAGACTGTTGTTCAAATTAGAGTGGTGTTAGCATATGTTGGAGAGACAAAAGCACTACAAGGCTATTCATCTACTCTGAGGGTTGCTCAAAAGATTGGTTACCGGACTGGACTTGCAAAGGGAATTGGATTAGGGGCTACATACTTTGTTGTTTTCTGCTGTTATGCACTTTTGTTATGGTATGGAGGTTATTTGGTTAGGCATCACTACACCAATGGAGGACTTGCAATTGCTACAATGTTTGCTGTTATGATCGGTGGATTGGCTTTAGGCCAGTCTGCACCAAGCATGGCCGCATTTACAAAGGCCAGAGTTGCTGCTGCGAAAATTTTCCATGTGATTGATCACAAGCCTTGTATAGACAAAAATAGTGACTCGGGTTTGGAGTTAGAGACTGTGACGGGACTAGTGGAGCTTAAAAATCCTTGTATAGACAAAAATAGTGACTCGGGTTTGGAGTTAGAGACTGTGACGGGACTAGTGGAGCTTAAAAATGTGAACTTTTCATATCCATCAAGACCTGAAGTTCAAATCCTTCACAATCTCTCCTTGAATGTTCCTTCTGGAAAGACCATAGCTTTGGTTGGAAGCAGTGGCTCTGGAAAAAGCACAGTTGTGTCCCTAATTGAGAGATTCTATGACCCTTCTTCTGGACAAGTTTTGATAGACGAACATGATGTTAAGACATTGAAGCTTAAATGGTTGAGACAACAGATAGGACTTGTGAGCCAAGAGCCTGCTTTATTTGCCACCACAATTAAAGAAAATATACTATTGGGCAGGCCTGGTGCAGATCAGGTTGAGATAGAAGAAGCTGCTAGAGTAGCTAATGCTCATTCATTCATCTTCAAACTTCCTCAAGGTTATGAAACACAGGTTGGGGAGAGAGGGTTGCAACTATCAGGGGGACAAAAACAGAGAATAGCGATTGCGAGGGCAATGCTGAAAAACCCGGCAATTCTTCTCCTAGATGAGGCCACGAGTGCATTGGACTCCGAGTCAGAAAAGCTGGTTCAAGAAGCTCTTGATAGGTTCATGATTGGTAGAACAACTCTTGTAATCGCGCATCGACTATCTACTATTCGCAAAGCTGACCTGGTGGCTGTACTTCAGCAAGGAATTGTTTCTGAAATTGGAACTCACGACGAGCTCTTTGCTAAAGGGGAAAATGGAGTTTATGCCAAGCTTATCAGAATGCAGGAGACGGCAAATGAAAGTTCAACAAGCAATGCCAGAAAAAGTAGTGCAAGGCCTTCAAGTGCTAGGAATTCTGTAAGCTCGCCGATAATTACCCGGAATTCTTCTTATGGCGGCCGATCACCATACTCGAGGAGGTTTTCTGATTTCTCCACATCTGATTTTAATCTCTCTGTTGATGCACCGTATCCAAATTACAAGCTTGAGAAGCTTGCATTCAAAGAGCAAGCGAGTTCCTTCTGGCGACTTGCGAAAATGAACTCTCCTGAATGGTTATATGCATTGATTGGTTCTATAGGCTCTATTGTTTGTGGATCCCTTAGTGCATTCTTTGCTTATGTTCTCAGTGCTGTTCTCAGTGTCTATTACAATCCAAACCATAAACACATGATTAGAGAAATCGAGAAATACTGCTACTTGCTGATTGGACTTTCGTCGGCTGCACTTTTATTCAATACATTGCAGCACTTCTTCTGGGATATTGTAGGTGAAAATCTTACTAAGCGAGTGAGGGAGAAAATGTTGAGCGCGGTGCTTAAAAATGAAATGGCGTGGTTTGATCGAGAGGAAAATGAGAGTGCTAGGATTGCAGCAAGGCTAGCTCTCGATGCCAACAATGTTAGATCTGCTATTGGAGATCGGATTTCGGTAATTGTGCAGAACACCGCACTTATGCTTGTTGCTTGTACTGCAGGGTTTGTATTGCAGTGGCGGCTTGCCCTTGTTCTCGTTGCTGTCTTCCCGGTTGTTGTCGCAGCCACTGTCTTACAGAAAATGTTCATGTCGGGTTTCTCTGGTGACTTGGAAGCCGCTCATGCTAAGGCCACACAACTAGCTGGGGAGGCTATAGCCAATGTAAGGACTGTTGCTGCGTTTAATTCGGAAAAGAAAATTGTTGGCCTTTTCGCTTCGAGCCTTGAAACTCCACTACGGCGTTGCTTTTGGAAGGGACAGATTTCTGGAATTGGTTATGGGATAGCTCAGTTTGCGCTCTATGCTTCCTATGCTCTCGGTCTGTGGTATGCTTCTTGGCTTGTGAAGCACGGCATCTCCGATTTCTCTAAAACAATCCGAGTATTTATGGTCCTCATGGTCTCTGCTAATGGTGCTGCCGAAACTTTAACTTTGGCTCCTGACTTTATCAAGGGAGGCCGAGCCATGAGGTCGGTCTTCGATCTCCTTGACCGTAGAACTGAAATTGAGCCAGATGATCCAGATGCTGCCCATGTCCCAGACTCTCTTCGCGGTGAAGTGGAACTCAAGCATGTTGACTTCTCTTATCCCAGCCGACAGGATATGCCTGTTTTCCGCGGCCTTAGTCTTCGTGCAAAGGCAGGCAAGACTCTTGCCCTTGTAGGCCCTAGTGGATGTGGTAAGAGCTCGGTTATTGCACTTATACAAAGACTCTACGATCCAACGTCCGGCCGTGTCATGATCGACGGAAAGGACATAAGGAAATACAACCTCAAGTCCCTTAGAAAACACATTGCAGTGGTGCCCCAAGAGCCATGCTTATTTGCTACTACTATTTACGAAAACATTTCATATGGACATGACTCAGCTTCCGAAGCCGAGATTATTGAAGCTGCGACTCTCGCCAATGCTCACAAGTTCATATCTTCTCTCCCCGACGGATACAAAACATTTGTTGGCGAACGAGGAGTTCAACTATCCGGTGGACAGAAGCAAAGAATAGCAATTGCTCGAGCTTTTATACGGAAAGCAGAACTTATGCTTCTCGATGAAGCAACAAGTGCACTCGATGCTGAATCGGAACGGTCTGTTCAAGAGGCCCTCGACCGTGCCTGCTCGGGAAAAACTACTATGATTGTTGCACACAGGCTGTCAACTATTAGGAATGCCAATCTCATTGCAGTGATTGATGATGGGAAAGTTGAGGAACAAGGCTCACATTCACATTTGTTGATAAATCACCCAGATGGGATCTACGCCCGAATGATTCAACTGCAAAGATTGACGAATAACCAAGTCGTTGGGACCGCGTCGAGTTCAGGTTCTTCAGCAAGAACAAAAGATGATGAAGTTGAATGCTAG 4077 0.4373 MSQASEQWKWSEMQGIELLSSSHTITPTPALELERGESKEQMELEGESSLPDNKSCDFSDGNEKIKNVASVGFGELFRFADGLDYILMTVGTLGAIVHGCSLPLFLRFFADLVNSFGSNADDLDKMTQEVVKYAFYFLIVGAAIWASSWAEISCWMWTGERQSTRMRIKYLEAALDQDIQFFDTEVRTSDVVFAINADAVMVQDAISEKLGNFVHYMATFVSGFAVGFSAVWQLALVTLAVVPMIAVIGGIHTTTLAKLSGKSQEALSQAGNIVEQTVVQIRVVLAYVGETKALQGYSSTLRVAQKIGYRTGLAKGIGLGATYFVVFCCYALLLWYGGYLVRHHYTNGGLAIATMFAVMIGGLALGQSAPSMAAFTKARVAAAKIFHVIDHKPCIDKNSDSGLELETVTGLVELKNPCIDKNSDSGLELETVTGLVELKNVNFSYPSRPEVQILHNLSLNVPSGKTIALVGSSGSGKSTVVSLIERFYDPSSGQVLIDEHDVKTLKLKWLRQQIGLVSQEPALFATTIKENILLGRPGADQVEIEEAARVANAHSFIFKLPQGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGIVSEIGTHDELFAKGENGVYAKLIRMQETANESSTSNARKSSARPSSARNSVSSPIITRNSSYGGRSPYSRRFSDFSTSDFNLSVDAPYPNYKLEKLAFKEQASSFWRLAKMNSPEWLYALIGSIGSIVCGSLSAFFAYVLSAVLSVYYNPNHKHMIREIEKYCYLLIGLSSAALLFNTLQHFFWDIVGENLTKRVREKMLSAVLKNEMAWFDREENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMSGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSEKKIVGLFASSLETPLRRCFWKGQISGIGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRRTEIEPDDPDAAHVPDSLRGEVELKHVDFSYPSRQDMPVFRGLSLRAKAGKTLALVGPSGCGKSSVIALIQRLYDPTSGRVMIDGKDIRKYNLKSLRKHIAVVPQEPCLFATTIYENISYGHDSASEAEIIEAATLANAHKFISSLPDGYKTFVGERGVQLSGGQKQRIAIARAFIRKAELMLLDEATSALDAESERSVQEALDRACSGKTTMIVAHRLSTIRNANLIAVIDDGKVEEQGSHSHLLINHPDGIYARMIQLQRLTNNQVVGTASSSGSSARTKDDEVEC* 1359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1699 1358 MobiDBLite consensus disorder prediction 29 53 - -
Psa6g1699 1358 Pfam ABC transporter transmembrane region 89 361 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g1699 1358 Pfam ABC transporter transmembrane region 770 1039 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g1699 1358 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1092 1328 IPR003439 GO:0005524
Psa6g1699 1358 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 90 377 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g1699 1358 CDD ABC_MTABC3_MDL1_MDL2 1092 1331 - -
Psa6g1699 1358 Gene3D ABC transporter type 1, transmembrane domain 67 416 IPR036640 GO:0005524|GO:0016021
Psa6g1699 1358 Gene3D ABC transporter type 1, transmembrane domain 417 690 IPR036640 GO:0005524|GO:0016021
Psa6g1699 1358 Gene3D ABC transporter type 1, transmembrane domain 1058 1335 IPR036640 GO:0005524|GO:0016021
Psa6g1699 1358 Gene3D ABC transporter type 1, transmembrane domain 748 1057 IPR036640 GO:0005524|GO:0016021
Psa6g1699 1358 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 416 1335 IPR039421 -
Psa6g1699 1358 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 88 416 IPR039421 -
Psa6g1699 1358 CDD ABC_6TM_Pgp_ABCB1_D2_like 758 1074 - -
Psa6g1699 1358 CDD ABC_6TM_Pgp_ABCB1_D1_like 88 385 - -
Psa6g1699 1358 Gene3D - 426 676 IPR027417 -
Psa6g1699 1358 Gene3D - 1082 1332 IPR027417 -
Psa6g1699 1358 SMART AAA_5 1119 1311 IPR003593 -
Psa6g1699 1358 SMART AAA_5 463 655 IPR003593 -
Psa6g1699 1358 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 88 416 - -
Psa6g1699 1358 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 416 1335 - -
Psa6g1699 1358 ProSitePatterns ABC transporters family signature. 1231 1245 IPR017871 GO:0005524
Psa6g1699 1358 MobiDBLite consensus disorder prediction 33 47 - -
Psa6g1699 1358 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 769 1056 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa6g1699 1358 MobiDBLite consensus disorder prediction 679 700 - -
Psa6g1699 1358 SUPERFAMILY ABC transporter transmembrane region 756 1076 IPR036640 GO:0005524|GO:0016021
Psa6g1699 1358 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1083 1331 IPR027417 -
Psa6g1699 1358 CDD ABC_MTABC3_MDL1_MDL2 436 675 - -
Psa6g1699 1358 Pfam ABC transporter 454 603 IPR003439 GO:0005524
Psa6g1699 1358 Pfam ABC transporter 1112 1259 IPR003439 GO:0005524
Psa6g1699 1358 ProSitePatterns ABC transporters family signature. 575 589 IPR017871 GO:0005524
Psa6g1699 1358 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 427 675 IPR027417 -
Psa6g1699 1358 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 436 672 IPR003439 GO:0005524
Psa6g1699 1358 SUPERFAMILY ABC transporter transmembrane region 76 396 IPR036640 GO:0005524|GO:0016021
Psa6g1699 1358 MobiDBLite consensus disorder prediction 1339 1358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1699 Psa-Chr6 94761600 94766827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1699 64 1355 Calmodulin-binding Proteins AT2G36910 83.991 0.0 2218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1699 K05658 - gmx:100777382 2211.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1699 6 94761600 94766827 Psa6g1699 6 94761600 94766827 ECH